Atomistry » Magnesium » PDB 8u9r-8umu » 8uhi
Atomistry »
  Magnesium »
    PDB 8u9r-8umu »
      8uhi »

Magnesium in PDB 8uhi: Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip (pdb code 8uhi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip, PDB code: 8uhi:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 8uhi

Go back to Magnesium Binding Sites List in 8uhi
Magnesium binding site 1 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:20.8
occ:1.00
 O3 A:RUB501 2.0 11.6 1.0
OE1 A:GLU205 2.0 12.0 1.0
OQ2 A:KCX202 2.0 21.8 1.0
OD1 A:ASP204 2.6 9.9 1.0
O2 A:RUB501 2.9 11.9 1.0
CD A:GLU205 3.0 6.4 1.0
C3 A:RUB501 3.2 11.9 1.0
CX A:KCX202 3.2 23.3 1.0
CG A:ASP204 3.4 10.5 1.0
C2 A:RUB501 3.4 13.6 1.0
OE2 A:GLU205 3.5 10.8 1.0
NE2 A:HIS295 3.6 6.1 1.0
N A:GLU205 3.7 4.1 1.0
OQ1 A:KCX202 3.8 22.9 1.0
OD2 A:ASP204 3.9 11.3 1.0
NZ A:LYS178 4.0 7.0 1.0
CA A:ASP204 4.0 5.2 1.0
CE1 A:HIS295 4.2 7.8 1.0
C4 A:RUB501 4.2 12.7 1.0
NZ A:KCX202 4.2 16.9 1.0
CB A:ASP204 4.2 6.0 1.0
ND2 B:ASN124 4.2 11.8 1.0
CG A:GLU205 4.3 4.0 1.0
CB A:GLU205 4.4 4.4 1.0
CG2 A:THR174 4.4 7.2 1.0
C A:ASP204 4.4 6.6 1.0
CD2 A:HIS295 4.5 3.4 1.0
NZ A:LYS176 4.5 11.1 1.0
CA A:GLU205 4.7 4.2 1.0
OG1 A:THR174 4.8 10.5 1.0
O4 A:RUB501 4.9 13.8 1.0
C1 A:RUB501 4.9 12.7 1.0

Magnesium binding site 2 out of 8 in 8uhi

Go back to Magnesium Binding Sites List in 8uhi
Magnesium binding site 2 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:20.8
occ:1.00
 O3 B:RUB501 2.0 11.6 1.0
OE1 B:GLU205 2.0 12.0 1.0
OQ1 B:KCX202 2.0 21.8 1.0
OD1 B:ASP204 2.6 9.9 1.0
O2 B:RUB501 2.9 11.9 1.0
CD B:GLU205 3.0 6.4 1.0
C3 B:RUB501 3.2 11.9 1.0
CX B:KCX202 3.2 23.3 1.0
CG B:ASP204 3.4 10.5 1.0
C2 B:RUB501 3.4 13.6 1.0
OE2 B:GLU205 3.5 10.8 1.0
NE2 B:HIS295 3.6 6.1 1.0
N B:GLU205 3.7 4.1 1.0
OQ2 B:KCX202 3.8 22.9 1.0
OD2 B:ASP204 3.9 11.3 1.0
NZ B:LYS178 4.0 7.0 1.0
CA B:ASP204 4.0 5.2 1.0
CE1 B:HIS295 4.2 7.8 1.0
C4 B:RUB501 4.2 12.7 1.0
NZ B:KCX202 4.2 16.9 1.0
CB B:ASP204 4.2 6.0 1.0
ND2 A:ASN124 4.3 11.8 1.0
CG B:GLU205 4.3 4.0 1.0
CB B:GLU205 4.4 4.4 1.0
CG2 B:THR174 4.4 7.2 1.0
C B:ASP204 4.4 6.6 1.0
CD2 B:HIS295 4.5 3.4 1.0
NZ B:LYS176 4.5 11.1 1.0
CA B:GLU205 4.7 4.2 1.0
OG1 B:THR174 4.8 10.5 1.0
O4 B:RUB501 4.9 13.8 1.0
C1 B:RUB501 4.9 12.7 1.0

Magnesium binding site 3 out of 8 in 8uhi

Go back to Magnesium Binding Sites List in 8uhi
Magnesium binding site 3 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:20.8
occ:1.00
 O3 C:RUB501 2.0 11.6 1.0
OE1 C:GLU205 2.0 12.0 1.0
OQ2 C:KCX202 2.0 21.8 1.0
OD1 C:ASP204 2.6 9.9 1.0
O2 C:RUB501 2.9 11.9 1.0
CD C:GLU205 3.0 6.4 1.0
C3 C:RUB501 3.2 11.9 1.0
CX C:KCX202 3.2 23.3 1.0
CG C:ASP204 3.4 10.5 1.0
C2 C:RUB501 3.4 13.6 1.0
OE2 C:GLU205 3.5 10.8 1.0
NE2 C:HIS295 3.6 6.1 1.0
N C:GLU205 3.7 4.1 1.0
OQ1 C:KCX202 3.8 22.9 1.0
OD2 C:ASP204 3.9 11.3 1.0
NZ C:LYS178 4.0 7.0 1.0
CA C:ASP204 4.0 5.2 1.0
CE1 C:HIS295 4.2 7.8 1.0
C4 C:RUB501 4.2 12.7 1.0
NZ C:KCX202 4.2 16.9 1.0
CB C:ASP204 4.2 6.0 1.0
ND2 D:ASN124 4.2 11.8 1.0
CG C:GLU205 4.3 4.0 1.0
CB C:GLU205 4.4 4.4 1.0
CG2 C:THR174 4.4 7.2 1.0
C C:ASP204 4.4 6.6 1.0
CD2 C:HIS295 4.5 3.4 1.0
NZ C:LYS176 4.5 11.1 1.0
CA C:GLU205 4.7 4.2 1.0
OG1 C:THR174 4.8 10.5 1.0
O4 C:RUB501 4.9 13.8 1.0
C1 C:RUB501 4.9 12.7 1.0

Magnesium binding site 4 out of 8 in 8uhi

Go back to Magnesium Binding Sites List in 8uhi
Magnesium binding site 4 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:20.8
occ:1.00
 O3 D:RUB501 2.0 11.6 1.0
OE1 D:GLU205 2.0 12.0 1.0
OQ1 D:KCX202 2.0 21.8 1.0
OD1 D:ASP204 2.6 9.9 1.0
O2 D:RUB501 2.9 11.9 1.0
CD D:GLU205 3.0 6.4 1.0
C3 D:RUB501 3.2 11.9 1.0
CX D:KCX202 3.2 23.3 1.0
CG D:ASP204 3.4 10.5 1.0
C2 D:RUB501 3.4 13.6 1.0
OE2 D:GLU205 3.5 10.8 1.0
NE2 D:HIS295 3.6 6.1 1.0
N D:GLU205 3.7 4.1 1.0
OQ2 D:KCX202 3.8 22.9 1.0
OD2 D:ASP204 3.9 11.3 1.0
NZ D:LYS178 4.0 7.0 1.0
CA D:ASP204 4.0 5.2 1.0
CE1 D:HIS295 4.2 7.8 1.0
C4 D:RUB501 4.2 12.7 1.0
NZ D:KCX202 4.2 16.9 1.0
CB D:ASP204 4.2 6.0 1.0
ND2 C:ASN124 4.2 11.8 1.0
CG D:GLU205 4.3 4.0 1.0
CB D:GLU205 4.4 4.4 1.0
CG2 D:THR174 4.4 7.2 1.0
C D:ASP204 4.4 6.6 1.0
CD2 D:HIS295 4.5 3.4 1.0
NZ D:LYS176 4.5 11.1 1.0
CA D:GLU205 4.7 4.2 1.0
OG1 D:THR174 4.8 10.5 1.0
O4 D:RUB501 4.9 13.8 1.0
C1 D:RUB501 4.9 12.7 1.0

Magnesium binding site 5 out of 8 in 8uhi

Go back to Magnesium Binding Sites List in 8uhi
Magnesium binding site 5 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:20.8
occ:1.00
 O3 E:RUB501 2.0 11.6 1.0
OE1 E:GLU205 2.0 12.0 1.0
OQ2 E:KCX202 2.0 21.8 1.0
OD1 E:ASP204 2.6 9.9 1.0
O2 E:RUB501 2.9 11.9 1.0
CD E:GLU205 3.0 6.4 1.0
C3 E:RUB501 3.2 11.9 1.0
CX E:KCX202 3.2 23.3 1.0
CG E:ASP204 3.4 10.5 1.0
C2 E:RUB501 3.4 13.6 1.0
OE2 E:GLU205 3.5 10.8 1.0
NE2 E:HIS295 3.6 6.1 1.0
N E:GLU205 3.7 4.1 1.0
OQ1 E:KCX202 3.8 22.9 1.0
OD2 E:ASP204 3.9 11.3 1.0
NZ E:LYS178 4.0 7.0 1.0
CA E:ASP204 4.0 5.2 1.0
CE1 E:HIS295 4.2 7.8 1.0
C4 E:RUB501 4.2 12.7 1.0
NZ E:KCX202 4.2 16.9 1.0
CB E:ASP204 4.2 6.0 1.0
ND2 F:ASN124 4.3 11.8 1.0
CG E:GLU205 4.3 4.0 1.0
CB E:GLU205 4.4 4.4 1.0
CG2 E:THR174 4.4 7.2 1.0
C E:ASP204 4.4 6.6 1.0
CD2 E:HIS295 4.5 3.4 1.0
NZ E:LYS176 4.5 11.1 1.0
CA E:GLU205 4.7 4.2 1.0
OG1 E:THR174 4.8 10.5 1.0
O4 E:RUB501 4.9 13.8 1.0
C1 E:RUB501 4.9 12.7 1.0

Magnesium binding site 6 out of 8 in 8uhi

Go back to Magnesium Binding Sites List in 8uhi
Magnesium binding site 6 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg502

b:20.8
occ:1.00
 O3 F:RUB501 2.0 11.6 1.0
OE1 F:GLU205 2.0 12.0 1.0
OQ1 F:KCX202 2.0 21.8 1.0
OD1 F:ASP204 2.6 9.9 1.0
O2 F:RUB501 2.9 11.9 1.0
CD F:GLU205 3.0 6.4 1.0
C3 F:RUB501 3.2 11.9 1.0
CX F:KCX202 3.2 23.3 1.0
CG F:ASP204 3.4 10.5 1.0
C2 F:RUB501 3.4 13.6 1.0
OE2 F:GLU205 3.5 10.8 1.0
NE2 F:HIS295 3.6 6.1 1.0
N F:GLU205 3.7 4.1 1.0
OQ2 F:KCX202 3.8 22.9 1.0
OD2 F:ASP204 3.9 11.3 1.0
NZ F:LYS178 4.0 7.0 1.0
CA F:ASP204 4.0 5.2 1.0
CE1 F:HIS295 4.2 7.8 1.0
C4 F:RUB501 4.2 12.7 1.0
NZ F:KCX202 4.2 16.9 1.0
CB F:ASP204 4.2 6.0 1.0
ND2 E:ASN124 4.2 11.8 1.0
CG F:GLU205 4.3 4.0 1.0
CB F:GLU205 4.4 4.4 1.0
CG2 F:THR174 4.4 7.2 1.0
C F:ASP204 4.4 6.6 1.0
CD2 F:HIS295 4.5 3.4 1.0
NZ F:LYS176 4.5 11.1 1.0
CA F:GLU205 4.7 4.2 1.0
OG1 F:THR174 4.8 10.5 1.0
O4 F:RUB501 4.9 13.8 1.0
C1 F:RUB501 4.9 12.7 1.0

Magnesium binding site 7 out of 8 in 8uhi

Go back to Magnesium Binding Sites List in 8uhi
Magnesium binding site 7 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg502

b:20.8
occ:1.00
 O3 G:RUB501 2.0 11.6 1.0
OE1 G:GLU205 2.0 12.0 1.0
OQ2 G:KCX202 2.0 21.8 1.0
OD1 G:ASP204 2.6 9.9 1.0
O2 G:RUB501 2.9 11.9 1.0
CD G:GLU205 3.0 6.4 1.0
C3 G:RUB501 3.2 11.9 1.0
CX G:KCX202 3.2 23.3 1.0
CG G:ASP204 3.4 10.5 1.0
C2 G:RUB501 3.4 13.6 1.0
OE2 G:GLU205 3.5 10.8 1.0
NE2 G:HIS295 3.6 6.1 1.0
N G:GLU205 3.7 4.1 1.0
OQ1 G:KCX202 3.8 22.9 1.0
OD2 G:ASP204 3.9 11.3 1.0
NZ G:LYS178 4.0 7.0 1.0
CA G:ASP204 4.0 5.2 1.0
CE1 G:HIS295 4.2 7.8 1.0
C4 G:RUB501 4.2 12.7 1.0
NZ G:KCX202 4.2 16.9 1.0
CB G:ASP204 4.2 6.0 1.0
ND2 H:ASN124 4.3 11.8 1.0
CG G:GLU205 4.3 4.0 1.0
CB G:GLU205 4.4 4.4 1.0
CG2 G:THR174 4.4 7.2 1.0
C G:ASP204 4.4 6.6 1.0
CD2 G:HIS295 4.5 3.4 1.0
NZ G:LYS176 4.5 11.1 1.0
CA G:GLU205 4.7 4.2 1.0
OG1 G:THR174 4.8 10.5 1.0
O4 G:RUB501 4.9 13.8 1.0
C1 G:RUB501 4.9 12.7 1.0

Magnesium binding site 8 out of 8 in 8uhi

Go back to Magnesium Binding Sites List in 8uhi
Magnesium binding site 8 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg502

b:20.8
occ:1.00
 O3 H:RUB501 2.0 11.6 1.0
OE1 H:GLU205 2.0 12.0 1.0
OQ1 H:KCX202 2.0 21.8 1.0
OD1 H:ASP204 2.6 9.9 1.0
O2 H:RUB501 2.9 11.9 1.0
CD H:GLU205 3.0 6.4 1.0
C3 H:RUB501 3.2 11.9 1.0
CX H:KCX202 3.2 23.3 1.0
CG H:ASP204 3.4 10.5 1.0
C2 H:RUB501 3.4 13.6 1.0
OE2 H:GLU205 3.5 10.8 1.0
NE2 H:HIS295 3.6 6.1 1.0
N H:GLU205 3.7 4.1 1.0
OQ2 H:KCX202 3.8 22.9 1.0
OD2 H:ASP204 3.9 11.3 1.0
NZ H:LYS178 4.0 7.0 1.0
CA H:ASP204 4.0 5.2 1.0
CE1 H:HIS295 4.2 7.8 1.0
C4 H:RUB501 4.2 12.7 1.0
NZ H:KCX202 4.2 16.9 1.0
ND2 G:ASN124 4.2 11.8 1.0
CB H:ASP204 4.2 6.0 1.0
CG H:GLU205 4.3 4.0 1.0
CB H:GLU205 4.4 4.4 1.0
CG2 H:THR174 4.4 7.2 1.0
C H:ASP204 4.4 6.6 1.0
CD2 H:HIS295 4.5 3.4 1.0
NZ H:LYS176 4.5 11.1 1.0
CA H:GLU205 4.7 4.2 1.0
OG1 H:THR174 4.8 10.5 1.0
O4 H:RUB501 4.9 13.8 1.0
C1 H:RUB501 4.9 12.7 1.0

Reference:

C.J.Gisriel, G.Shen, G.W.Brudvig, D.A.Bryant. Structure of the Antenna Complex Expressed During Far-Red Light Photoacclimation in Synechococcus Sp. Pcc 7335. J.Biol.Chem. 05590 2023.
ISSN: ESSN 1083-351X
PubMed: 38141759
DOI: 10.1016/J.JBC.2023.105590
Page generated: Fri Oct 4 21:18:02 2024

Last articles

Zn in 2YRC
Zn in 2YQP
Zn in 2YR2
Zn in 2YQL
Zn in 2YPT
Zn in 2YPA
Zn in 2YPU
Zn in 2YNW
Zn in 2YNT
Zn in 2YNV
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy