Magnesium in PDB 8uhi: Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip (pdb code 8uhi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip, PDB code: 8uhi:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 8uhi

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Magnesium binding site 1 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:20.8
occ:1.00
 O3 A:RUB501 2.0 11.6 1.0
OE1 A:GLU205 2.0 12.0 1.0
OQ2 A:KCX202 2.0 21.8 1.0
OD1 A:ASP204 2.6 9.9 1.0
O2 A:RUB501 2.9 11.9 1.0
CD A:GLU205 3.0 6.4 1.0
C3 A:RUB501 3.2 11.9 1.0
CX A:KCX202 3.2 23.3 1.0
CG A:ASP204 3.4 10.5 1.0
C2 A:RUB501 3.4 13.6 1.0
OE2 A:GLU205 3.5 10.8 1.0
NE2 A:HIS295 3.6 6.1 1.0
N A:GLU205 3.7 4.1 1.0
OQ1 A:KCX202 3.8 22.9 1.0
OD2 A:ASP204 3.9 11.3 1.0
NZ A:LYS178 4.0 7.0 1.0
CA A:ASP204 4.0 5.2 1.0
CE1 A:HIS295 4.2 7.8 1.0
C4 A:RUB501 4.2 12.7 1.0
NZ A:KCX202 4.2 16.9 1.0
CB A:ASP204 4.2 6.0 1.0
ND2 B:ASN124 4.2 11.8 1.0
CG A:GLU205 4.3 4.0 1.0
CB A:GLU205 4.4 4.4 1.0
CG2 A:THR174 4.4 7.2 1.0
C A:ASP204 4.4 6.6 1.0
CD2 A:HIS295 4.5 3.4 1.0
NZ A:LYS176 4.5 11.1 1.0
CA A:GLU205 4.7 4.2 1.0
OG1 A:THR174 4.8 10.5 1.0
O4 A:RUB501 4.9 13.8 1.0
C1 A:RUB501 4.9 12.7 1.0

Magnesium binding site 2 out of 8 in 8uhi

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Magnesium binding site 2 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:20.8
occ:1.00
 O3 B:RUB501 2.0 11.6 1.0
OE1 B:GLU205 2.0 12.0 1.0
OQ1 B:KCX202 2.0 21.8 1.0
OD1 B:ASP204 2.6 9.9 1.0
O2 B:RUB501 2.9 11.9 1.0
CD B:GLU205 3.0 6.4 1.0
C3 B:RUB501 3.2 11.9 1.0
CX B:KCX202 3.2 23.3 1.0
CG B:ASP204 3.4 10.5 1.0
C2 B:RUB501 3.4 13.6 1.0
OE2 B:GLU205 3.5 10.8 1.0
NE2 B:HIS295 3.6 6.1 1.0
N B:GLU205 3.7 4.1 1.0
OQ2 B:KCX202 3.8 22.9 1.0
OD2 B:ASP204 3.9 11.3 1.0
NZ B:LYS178 4.0 7.0 1.0
CA B:ASP204 4.0 5.2 1.0
CE1 B:HIS295 4.2 7.8 1.0
C4 B:RUB501 4.2 12.7 1.0
NZ B:KCX202 4.2 16.9 1.0
CB B:ASP204 4.2 6.0 1.0
ND2 A:ASN124 4.3 11.8 1.0
CG B:GLU205 4.3 4.0 1.0
CB B:GLU205 4.4 4.4 1.0
CG2 B:THR174 4.4 7.2 1.0
C B:ASP204 4.4 6.6 1.0
CD2 B:HIS295 4.5 3.4 1.0
NZ B:LYS176 4.5 11.1 1.0
CA B:GLU205 4.7 4.2 1.0
OG1 B:THR174 4.8 10.5 1.0
O4 B:RUB501 4.9 13.8 1.0
C1 B:RUB501 4.9 12.7 1.0

Magnesium binding site 3 out of 8 in 8uhi

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Magnesium binding site 3 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:20.8
occ:1.00
 O3 C:RUB501 2.0 11.6 1.0
OE1 C:GLU205 2.0 12.0 1.0
OQ2 C:KCX202 2.0 21.8 1.0
OD1 C:ASP204 2.6 9.9 1.0
O2 C:RUB501 2.9 11.9 1.0
CD C:GLU205 3.0 6.4 1.0
C3 C:RUB501 3.2 11.9 1.0
CX C:KCX202 3.2 23.3 1.0
CG C:ASP204 3.4 10.5 1.0
C2 C:RUB501 3.4 13.6 1.0
OE2 C:GLU205 3.5 10.8 1.0
NE2 C:HIS295 3.6 6.1 1.0
N C:GLU205 3.7 4.1 1.0
OQ1 C:KCX202 3.8 22.9 1.0
OD2 C:ASP204 3.9 11.3 1.0
NZ C:LYS178 4.0 7.0 1.0
CA C:ASP204 4.0 5.2 1.0
CE1 C:HIS295 4.2 7.8 1.0
C4 C:RUB501 4.2 12.7 1.0
NZ C:KCX202 4.2 16.9 1.0
CB C:ASP204 4.2 6.0 1.0
ND2 D:ASN124 4.2 11.8 1.0
CG C:GLU205 4.3 4.0 1.0
CB C:GLU205 4.4 4.4 1.0
CG2 C:THR174 4.4 7.2 1.0
C C:ASP204 4.4 6.6 1.0
CD2 C:HIS295 4.5 3.4 1.0
NZ C:LYS176 4.5 11.1 1.0
CA C:GLU205 4.7 4.2 1.0
OG1 C:THR174 4.8 10.5 1.0
O4 C:RUB501 4.9 13.8 1.0
C1 C:RUB501 4.9 12.7 1.0

Magnesium binding site 4 out of 8 in 8uhi

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Magnesium binding site 4 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:20.8
occ:1.00
 O3 D:RUB501 2.0 11.6 1.0
OE1 D:GLU205 2.0 12.0 1.0
OQ1 D:KCX202 2.0 21.8 1.0
OD1 D:ASP204 2.6 9.9 1.0
O2 D:RUB501 2.9 11.9 1.0
CD D:GLU205 3.0 6.4 1.0
C3 D:RUB501 3.2 11.9 1.0
CX D:KCX202 3.2 23.3 1.0
CG D:ASP204 3.4 10.5 1.0
C2 D:RUB501 3.4 13.6 1.0
OE2 D:GLU205 3.5 10.8 1.0
NE2 D:HIS295 3.6 6.1 1.0
N D:GLU205 3.7 4.1 1.0
OQ2 D:KCX202 3.8 22.9 1.0
OD2 D:ASP204 3.9 11.3 1.0
NZ D:LYS178 4.0 7.0 1.0
CA D:ASP204 4.0 5.2 1.0
CE1 D:HIS295 4.2 7.8 1.0
C4 D:RUB501 4.2 12.7 1.0
NZ D:KCX202 4.2 16.9 1.0
CB D:ASP204 4.2 6.0 1.0
ND2 C:ASN124 4.2 11.8 1.0
CG D:GLU205 4.3 4.0 1.0
CB D:GLU205 4.4 4.4 1.0
CG2 D:THR174 4.4 7.2 1.0
C D:ASP204 4.4 6.6 1.0
CD2 D:HIS295 4.5 3.4 1.0
NZ D:LYS176 4.5 11.1 1.0
CA D:GLU205 4.7 4.2 1.0
OG1 D:THR174 4.8 10.5 1.0
O4 D:RUB501 4.9 13.8 1.0
C1 D:RUB501 4.9 12.7 1.0

Magnesium binding site 5 out of 8 in 8uhi

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Magnesium binding site 5 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:20.8
occ:1.00
 O3 E:RUB501 2.0 11.6 1.0
OE1 E:GLU205 2.0 12.0 1.0
OQ2 E:KCX202 2.0 21.8 1.0
OD1 E:ASP204 2.6 9.9 1.0
O2 E:RUB501 2.9 11.9 1.0
CD E:GLU205 3.0 6.4 1.0
C3 E:RUB501 3.2 11.9 1.0
CX E:KCX202 3.2 23.3 1.0
CG E:ASP204 3.4 10.5 1.0
C2 E:RUB501 3.4 13.6 1.0
OE2 E:GLU205 3.5 10.8 1.0
NE2 E:HIS295 3.6 6.1 1.0
N E:GLU205 3.7 4.1 1.0
OQ1 E:KCX202 3.8 22.9 1.0
OD2 E:ASP204 3.9 11.3 1.0
NZ E:LYS178 4.0 7.0 1.0
CA E:ASP204 4.0 5.2 1.0
CE1 E:HIS295 4.2 7.8 1.0
C4 E:RUB501 4.2 12.7 1.0
NZ E:KCX202 4.2 16.9 1.0
CB E:ASP204 4.2 6.0 1.0
ND2 F:ASN124 4.3 11.8 1.0
CG E:GLU205 4.3 4.0 1.0
CB E:GLU205 4.4 4.4 1.0
CG2 E:THR174 4.4 7.2 1.0
C E:ASP204 4.4 6.6 1.0
CD2 E:HIS295 4.5 3.4 1.0
NZ E:LYS176 4.5 11.1 1.0
CA E:GLU205 4.7 4.2 1.0
OG1 E:THR174 4.8 10.5 1.0
O4 E:RUB501 4.9 13.8 1.0
C1 E:RUB501 4.9 12.7 1.0

Magnesium binding site 6 out of 8 in 8uhi

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Magnesium binding site 6 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg502

b:20.8
occ:1.00
 O3 F:RUB501 2.0 11.6 1.0
OE1 F:GLU205 2.0 12.0 1.0
OQ1 F:KCX202 2.0 21.8 1.0
OD1 F:ASP204 2.6 9.9 1.0
O2 F:RUB501 2.9 11.9 1.0
CD F:GLU205 3.0 6.4 1.0
C3 F:RUB501 3.2 11.9 1.0
CX F:KCX202 3.2 23.3 1.0
CG F:ASP204 3.4 10.5 1.0
C2 F:RUB501 3.4 13.6 1.0
OE2 F:GLU205 3.5 10.8 1.0
NE2 F:HIS295 3.6 6.1 1.0
N F:GLU205 3.7 4.1 1.0
OQ2 F:KCX202 3.8 22.9 1.0
OD2 F:ASP204 3.9 11.3 1.0
NZ F:LYS178 4.0 7.0 1.0
CA F:ASP204 4.0 5.2 1.0
CE1 F:HIS295 4.2 7.8 1.0
C4 F:RUB501 4.2 12.7 1.0
NZ F:KCX202 4.2 16.9 1.0
CB F:ASP204 4.2 6.0 1.0
ND2 E:ASN124 4.2 11.8 1.0
CG F:GLU205 4.3 4.0 1.0
CB F:GLU205 4.4 4.4 1.0
CG2 F:THR174 4.4 7.2 1.0
C F:ASP204 4.4 6.6 1.0
CD2 F:HIS295 4.5 3.4 1.0
NZ F:LYS176 4.5 11.1 1.0
CA F:GLU205 4.7 4.2 1.0
OG1 F:THR174 4.8 10.5 1.0
O4 F:RUB501 4.9 13.8 1.0
C1 F:RUB501 4.9 12.7 1.0

Magnesium binding site 7 out of 8 in 8uhi

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Magnesium binding site 7 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg502

b:20.8
occ:1.00
 O3 G:RUB501 2.0 11.6 1.0
OE1 G:GLU205 2.0 12.0 1.0
OQ2 G:KCX202 2.0 21.8 1.0
OD1 G:ASP204 2.6 9.9 1.0
O2 G:RUB501 2.9 11.9 1.0
CD G:GLU205 3.0 6.4 1.0
C3 G:RUB501 3.2 11.9 1.0
CX G:KCX202 3.2 23.3 1.0
CG G:ASP204 3.4 10.5 1.0
C2 G:RUB501 3.4 13.6 1.0
OE2 G:GLU205 3.5 10.8 1.0
NE2 G:HIS295 3.6 6.1 1.0
N G:GLU205 3.7 4.1 1.0
OQ1 G:KCX202 3.8 22.9 1.0
OD2 G:ASP204 3.9 11.3 1.0
NZ G:LYS178 4.0 7.0 1.0
CA G:ASP204 4.0 5.2 1.0
CE1 G:HIS295 4.2 7.8 1.0
C4 G:RUB501 4.2 12.7 1.0
NZ G:KCX202 4.2 16.9 1.0
CB G:ASP204 4.2 6.0 1.0
ND2 H:ASN124 4.3 11.8 1.0
CG G:GLU205 4.3 4.0 1.0
CB G:GLU205 4.4 4.4 1.0
CG2 G:THR174 4.4 7.2 1.0
C G:ASP204 4.4 6.6 1.0
CD2 G:HIS295 4.5 3.4 1.0
NZ G:LYS176 4.5 11.1 1.0
CA G:GLU205 4.7 4.2 1.0
OG1 G:THR174 4.8 10.5 1.0
O4 G:RUB501 4.9 13.8 1.0
C1 G:RUB501 4.9 12.7 1.0

Magnesium binding site 8 out of 8 in 8uhi

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Magnesium binding site 8 out of 8 in the Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of the Far-Red Light-Absorbing Allophycocyanin Core Expressed During Farlip within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg502

b:20.8
occ:1.00
 O3 H:RUB501 2.0 11.6 1.0
OE1 H:GLU205 2.0 12.0 1.0
OQ1 H:KCX202 2.0 21.8 1.0
OD1 H:ASP204 2.6 9.9 1.0
O2 H:RUB501 2.9 11.9 1.0
CD H:GLU205 3.0 6.4 1.0
C3 H:RUB501 3.2 11.9 1.0
CX H:KCX202 3.2 23.3 1.0
CG H:ASP204 3.4 10.5 1.0
C2 H:RUB501 3.4 13.6 1.0
OE2 H:GLU205 3.5 10.8 1.0
NE2 H:HIS295 3.6 6.1 1.0
N H:GLU205 3.7 4.1 1.0
OQ2 H:KCX202 3.8 22.9 1.0
OD2 H:ASP204 3.9 11.3 1.0
NZ H:LYS178 4.0 7.0 1.0
CA H:ASP204 4.0 5.2 1.0
CE1 H:HIS295 4.2 7.8 1.0
C4 H:RUB501 4.2 12.7 1.0
NZ H:KCX202 4.2 16.9 1.0
ND2 G:ASN124 4.2 11.8 1.0
CB H:ASP204 4.2 6.0 1.0
CG H:GLU205 4.3 4.0 1.0
CB H:GLU205 4.4 4.4 1.0
CG2 H:THR174 4.4 7.2 1.0
C H:ASP204 4.4 6.6 1.0
CD2 H:HIS295 4.5 3.4 1.0
NZ H:LYS176 4.5 11.1 1.0
CA H:GLU205 4.7 4.2 1.0
OG1 H:THR174 4.8 10.5 1.0
O4 H:RUB501 4.9 13.8 1.0
C1 H:RUB501 4.9 12.7 1.0

Reference:

C.J.Gisriel, G.Shen, G.W.Brudvig, D.A.Bryant. Structure of the Antenna Complex Expressed During Far-Red Light Photoacclimation in Synechococcus Sp. Pcc 7335. J.Biol.Chem. 05590 2023.
ISSN: ESSN 1083-351X
PubMed: 38141759
DOI: 10.1016/J.JBC.2023.105590
Page generated: Fri Oct 4 21:18:02 2024

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