Magnesium in PDB 8ui9: Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2

The binding sites of Magnesium atom in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2 (pdb code 8ui9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2, PDB code: 8ui9:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2001 b:89.4 occ:1.00 OE2 A:GLU1305 2.0 61.3 1.0 O3G A:AGS2002 2.0 77.8 1.0 O1B A:AGS2002 2.1 87.3 1.0 OG1 A:THR1139 2.5 78.8 1.0 OE1 A:GLU1306 2.8 74.3 1.0 CD A:GLU1305 3.2 66.1 1.0 PG A:AGS2002 3.3 77.1 1.0 PB A:AGS2002 3.3 86.2 1.0 O3B A:AGS2002 3.6 78.8 1.0 CG A:GLU1305 3.9 69.0 1.0 CB A:THR1139 3.9 78.9 1.0 CG2 A:THR1335 3.9 67.1 1.0 CD A:GLU1306 4.0 74.0 1.0 S1G A:AGS2002 4.0 84.3 1.0 OE1 A:GLU1305 4.2 70.2 1.0 O2B A:AGS2002 4.2 85.5 1.0 O1A A:AGS2002 4.5 82.9 1.0 CE A:LYS1138 4.5 71.9 1.0 O3A A:AGS2002 4.5 79.4 1.0 O2G A:AGS2002 4.5 82.8 1.0 N A:THR1139 4.5 79.7 1.0 OE2 A:GLU1306 4.6 70.5 1.0 NH2 B:ARG184 4.7 64.6 1.0 CG2 A:THR1139 4.7 80.0 1.0 O2A A:AGS2002 4.8 83.3 1.0 CA A:THR1139 4.8 79.6 1.0 PA A:AGS2002 4.8 81.0 1.0 NZ A:LYS1138 4.9 71.3 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:43.9 occ:1.00 OG1 B:THR83 2.0 33.9 1.0 O3G B:AGS402 2.4 46.6 1.0 NH2 C:ARG139 2.8 37.5 1.0 O1B B:AGS402 2.8 39.8 1.0 CB B:THR83 3.2 23.4 1.0 PG B:AGS402 3.8 51.7 1.0 CG2 B:THR83 3.8 25.8 1.0 CZ C:ARG139 3.8 36.8 1.0 NH1 C:ARG139 4.0 31.3 1.0 NH1 C:ARG140 4.1 43.9 1.0 PB B:AGS402 4.1 36.9 1.0 S1G B:AGS402 4.2 59.0 1.0 OD2 B:ASP141 4.3 51.2 1.0 O1A B:AGS402 4.3 52.9 1.0 O3B B:AGS402 4.4 49.4 1.0 CA B:THR83 4.4 29.5 1.0 CG B:ASP141 4.5 46.5 1.0 CZ C:ARG140 4.6 43.4 1.0 N B:THR83 4.6 38.1 1.0 NH2 B:ARG230 4.6 79.2 1.0 OD1 B:ASP141 4.7 46.2 1.0 O3A B:AGS402 4.9 32.0 1.0 O2G B:AGS402 4.9 50.6 1.0 PA B:AGS402 5.0 45.9 1.0 NE C:ARG139 5.0 36.6 1.0 NE C:ARG140 5.0 36.4 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:104.0 occ:1.00 O2G C:AGS402 2.0 138.5 1.0 OG1 C:THR67 2.1 114.9 1.0 O1B C:AGS402 2.8 136.4 1.0 CB C:THR67 3.2 113.7 1.0 PG C:AGS402 3.2 142.1 1.0 S1G C:AGS402 3.4 143.2 1.0 O1A C:AGS402 3.7 139.6 1.0 OD2 C:ASP125 3.7 74.6 1.0 PB C:AGS402 3.9 143.5 1.0 O3B C:AGS402 3.9 138.6 1.0 CG2 C:THR67 4.0 112.0 1.0 OD1 C:ASP125 4.1 68.5 1.0 O2A C:AGS402 4.1 136.5 1.0 N C:THR67 4.2 108.8 1.0 CA C:THR67 4.3 111.8 1.0 CG C:ASP125 4.3 70.4 1.0 PA C:AGS402 4.3 143.4 1.0 O3G C:AGS402 4.4 136.2 1.0 O3A C:AGS402 4.6 140.1 1.0 CE C:LYS66 4.7 94.3 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:126.1 occ:1.00 OG1 D:THR85 2.1 140.1 1.0 CG2 D:THR85 2.7 139.7 1.0 CB D:THR85 2.8 139.9 1.0 O3G D:AGS402 2.9 130.8 1.0 OD2 D:ASP150 3.2 153.2 1.0 CG D:ASP150 4.1 153.1 1.0 CA D:THR85 4.2 139.5 1.0 O2B D:AGS402 4.2 131.5 1.0 PG D:AGS402 4.4 137.7 1.0 O3A D:AGS402 4.5 133.1 1.0 OD1 D:ASP150 4.6 153.2 1.0 N D:THR85 4.7 138.9 1.0 O2A D:AGS402 5.0 130.6 1.0 PB D:AGS402 5.0 136.6 1.0

F.Wang, Q.He, H.Li, M.E.O'donnel. Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Cracked Pcna Complex in Intermediate State 2 To Be Published.