Magnesium in PDB 8uii: Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1

The binding sites of Magnesium atom in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1 (pdb code 8uii). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1, PDB code: 8uii:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2001 b:49.4 occ:1.00 OE2 A:GLU1305 2.1 40.8 1.0 O1B A:AGS2002 2.1 53.4 1.0 O3G A:AGS2002 2.1 50.7 1.0 OG1 A:THR1139 2.1 38.7 1.0 CB A:THR1139 3.1 33.5 1.0 CD A:GLU1305 3.2 44.3 1.0 O1A A:AGS2002 3.3 39.4 1.0 PB A:AGS2002 3.4 43.8 1.0 PG A:AGS2002 3.5 39.8 1.0 OE1 A:GLU1305 3.7 45.3 1.0 CG2 A:THR1139 3.8 33.4 1.0 O3B A:AGS2002 3.9 33.6 1.0 O3A A:AGS2002 4.1 34.5 1.0 PA A:AGS2002 4.1 24.6 1.0 O2G A:AGS2002 4.1 44.9 1.0 CA A:THR1139 4.3 27.0 1.0 N A:THR1139 4.4 35.5 1.0 CG A:GLU1305 4.4 47.4 1.0 OE2 B:GLU159 4.4 41.6 1.0 NH1 B:ARG156 4.5 37.4 1.0 O2A A:AGS2002 4.5 43.8 1.0 OE2 A:GLU1306 4.5 48.6 1.0 O2B A:AGS2002 4.6 46.4 1.0 CG2 A:THR1335 4.6 40.8 1.0 S1G A:AGS2002 4.9 52.7 1.0 CD B:ARG156 4.9 33.6 1.0 CZ B:ARG156 5.0 36.4 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:44.5 occ:1.00 OG1 B:THR83 2.7 26.0 1.0 O2G B:AGS402 2.8 54.0 1.0 NH2 C:ARG139 3.1 33.9 1.0 CB B:THR83 3.4 9.9 1.0 O1B B:AGS402 3.6 53.7 1.0 CG2 B:THR83 3.8 12.9 1.0 NH2 B:ARG230 4.0 50.8 1.0 OE2 B:GLU142 4.1 39.7 1.0 O3A B:AGS402 4.1 46.3 1.0 O1A B:AGS402 4.2 51.0 1.0 PG B:AGS402 4.2 34.9 1.0 NH2 C:ARG140 4.3 42.3 1.0 PB B:AGS402 4.3 24.1 1.0 CZ C:ARG140 4.4 45.8 1.0 CZ C:ARG139 4.4 33.6 1.0 OD2 B:ASP141 4.6 43.6 1.0 NH1 C:ARG140 4.7 43.0 1.0 NE C:ARG140 4.7 46.6 1.0 S1G B:AGS402 4.8 51.9 1.0 PA B:AGS402 4.8 34.4 1.0 O3B B:AGS402 4.8 45.9 1.0 CA B:THR83 4.9 8.8 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:54.0 occ:1.00 OG1 C:THR67 2.3 57.0 1.0 O1B C:AGS402 2.4 59.3 1.0 O3G C:AGS402 2.8 72.9 1.0 CB C:THR67 3.1 39.0 1.0 CG2 C:THR67 3.6 44.8 1.0 O1A C:AGS402 3.6 62.3 1.0 PB C:AGS402 3.7 36.3 1.0 OD2 C:ASP125 3.7 49.6 1.0 PG C:AGS402 4.0 60.5 1.0 NH2 C:ARG214 4.1 55.4 1.0 O3A C:AGS402 4.2 63.5 1.0 O3B C:AGS402 4.4 50.5 1.0 OD1 C:ASP125 4.4 54.1 1.0 PA C:AGS402 4.4 52.5 1.0 CG C:ASP125 4.4 55.5 1.0 S1G C:AGS402 4.4 54.1 1.0 CA C:THR67 4.5 31.0 1.0 N C:THR67 4.8 40.0 1.0 O2B C:AGS402 4.9 62.0 1.0 O2A C:AGS402 4.9 52.8 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Map of Human Clamp-Clamp Loader ATAD5-Rfc-Closed Pcna Complex in Intermediate State 1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:65.6 occ:1.00 O3G D:AGS402 2.1 66.8 1.0 OG1 D:THR85 2.1 62.6 1.0 O2B D:AGS402 3.2 60.6 1.0 CB D:THR85 3.3 61.6 1.0 CG2 D:THR85 3.7 59.6 1.0 PG D:AGS402 3.7 73.1 1.0 PB D:AGS402 4.2 54.5 1.0 O3A D:AGS402 4.3 63.6 1.0 OD1 D:ASP150 4.3 65.1 1.0 O3B D:AGS402 4.4 62.1 1.0 O2G D:AGS402 4.5 65.2 1.0 CA D:THR85 4.5 62.2 1.0 S1G D:AGS402 4.5 65.7 1.0 CG D:ASP150 4.6 66.2 1.0 N D:THR85 4.8 61.6 1.0 CG2 D:ILE179 4.8 54.1 1.0

F.Wang, Q.He, H.Li, M.E.O'donnel. Cryo-Em Map of Human Clmap-Clamp Loader ATAD5-Rfc-Closed Pcna Complex To Be Published.