Magnesium in PDB 8uk9: Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
Protein crystallography data
The structure of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog, PDB code: 8uk9
was solved by
K.Marcus,
S.Ghaffari-Kashani,
C.L.Gee,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.13 / 3.10 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 95.243, 231.991, 264.511, 90, 90, 90 |
| R / Rfree (%) | 25.3 / 26.5 |
Other elements in 8uk9:
The structure of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog also contains other interesting chemical elements:
| Fluorine | (F) | 18 atoms |
| Aluminium | (Al) | 6 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
(pdb code 8uk9). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog, PDB code: 8uk9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Magnesium where determined in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog, PDB code: 8uk9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Magnesium binding site 1 out of 8 in 8uk9
Go back to
Magnesium Binding Sites List in 8uk9
Magnesium binding site 1 out
of 8 in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog within 5.0Å range:
|
Magnesium binding site 2 out of 8 in 8uk9
Go back to
Magnesium Binding Sites List in 8uk9
Magnesium binding site 2 out
of 8 in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog within 5.0Å range:
|
Magnesium binding site 3 out of 8 in 8uk9
Go back to
Magnesium Binding Sites List in 8uk9
Magnesium binding site 3 out
of 8 in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog within 5.0Å range:
|
Magnesium binding site 4 out of 8 in 8uk9
Go back to
Magnesium Binding Sites List in 8uk9
Magnesium binding site 4 out
of 8 in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog within 5.0Å range:
|
Magnesium binding site 5 out of 8 in 8uk9
Go back to
Magnesium Binding Sites List in 8uk9
Magnesium binding site 5 out
of 8 in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog within 5.0Å range:
|
Magnesium binding site 6 out of 8 in 8uk9
Go back to
Magnesium Binding Sites List in 8uk9
Magnesium binding site 6 out
of 8 in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog within 5.0Å range:
|
Magnesium binding site 7 out of 8 in 8uk9
Go back to
Magnesium Binding Sites List in 8uk9
Magnesium binding site 7 out
of 8 in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog within 5.0Å range:
|
Magnesium binding site 8 out of 8 in 8uk9
Go back to
Magnesium Binding Sites List in 8uk9
Magnesium binding site 8 out
of 8 in the Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of T4 Bacteriophage Clamp Loader Mutant D110C Bound to the T4 Clamp, Primer-Template Dna, and Atp Analog within 5.0Å range:
|
Reference:
K.Marcus,
Y.Huang,
S.Subramanian,
C.L.Gee,
K.Gorday,
S.Ghaffari-Kashani,
X.R.Luo,
L.Zheng,
M.O'donnel,
S.Subramanian,
J.Kuriyan.
Autoinhibition of A Clamp-Loader Atpase Revealed By Deep Mutagenesis and Cryo-Em To Be Published.
Page generated: Fri Oct 4 21:21:02 2024
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