Magnesium in PDB 8umt: Atomic Model of the Human CTF18-Rfc-Pcna Binary Complex in the Three- Subunit Binding State (State 2)

The binding sites of Magnesium atom in the Atomic Model of the Human CTF18-Rfc-Pcna Binary Complex in the Three- Subunit Binding State (State 2) (pdb code 8umt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Atomic Model of the Human CTF18-Rfc-Pcna Binary Complex in the Three- Subunit Binding State (State 2), PDB code: 8umt:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Atomic Model of the Human CTF18-Rfc-Pcna Binary Complex in the Three- Subunit Binding State (State 2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atomic Model of the Human CTF18-Rfc-Pcna Binary Complex in the Three- Subunit Binding State (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:44.7 occ:1.00 O1B B:AGS402 2.0 45.4 1.0 O2G B:AGS402 2.1 45.4 1.0 OG1 B:THR83 2.1 38.7 1.0 O1A B:AGS402 2.1 52.6 1.0 O3A B:AGS402 2.3 47.1 1.0 PA B:AGS402 2.4 49.5 1.0 PB B:AGS402 2.5 58.8 1.0 O2A B:AGS402 2.8 44.5 1.0 PG B:AGS402 3.0 61.7 1.0 O3B B:AGS402 3.1 58.5 1.0 O3G B:AGS402 3.4 50.4 1.0 CB B:THR83 3.4 37.0 1.0 CG2 B:THR83 3.9 40.8 1.0 O5' B:AGS402 3.9 47.8 1.0 O2B B:AGS402 3.9 57.1 1.0 OD2 B:ASP141 3.9 43.6 1.0 N B:THR83 4.1 41.3 1.0 CA B:THR83 4.4 29.4 1.0 OD1 B:ASP141 4.6 44.2 1.0 CG B:ASP141 4.6 44.3 1.0 S1G B:AGS402 4.8 62.9 1.0 NH2 C:ARG139 4.8 32.1 1.0

Magnesium binding site 2 out of 3 in the Atomic Model of the Human CTF18-Rfc-Pcna Binary Complex in the Three- Subunit Binding State (State 2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atomic Model of the Human CTF18-Rfc-Pcna Binary Complex in the Three- Subunit Binding State (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:50.2 occ:1.00 OD2 C:ASP125 2.2 59.1 1.0 OG1 C:THR67 2.5 28.5 1.0 O3G C:AGS402 2.6 40.3 1.0 CG C:ASP125 3.0 56.5 1.0 OD1 C:ASP125 3.2 55.2 1.0 O1B C:AGS402 3.6 32.1 1.0 CB C:THR67 3.7 16.4 1.0 CG2 C:THR67 4.0 22.8 1.0 PG C:AGS402 4.1 47.4 1.0 CB C:ASP125 4.4 54.9 1.0 CD1 C:ILE154 4.6 32.7 1.0 S1G C:AGS402 4.7 59.9 1.0 PB C:AGS402 4.7 30.0 1.0 CA C:THR67 4.9 12.5 1.0 O3B C:AGS402 4.9 43.8 1.0 O2G C:AGS402 5.0 40.9 1.0

Magnesium binding site 3 out of 3 in the Atomic Model of the Human CTF18-Rfc-Pcna Binary Complex in the Three- Subunit Binding State (State 2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atomic Model of the Human CTF18-Rfc-Pcna Binary Complex in the Three- Subunit Binding State (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:80.2 occ:1.00 O3G D:AGS402 2.1 86.2 1.0 S1G D:AGS402 2.5 88.0 1.0 OD2 D:ASP150 2.6 70.9 1.0 OD1 D:ASP150 2.7 71.7 1.0 PG D:AGS402 2.7 89.0 1.0 CG D:ASP150 3.0 72.1 1.0 O2B D:AGS402 3.4 82.7 1.0 OG1 D:THR85 3.5 72.1 1.0 O2G D:AGS402 3.7 83.4 1.0 O3B D:AGS402 4.0 86.9 1.0 PB D:AGS402 4.4 88.1 1.0 CB D:ASP150 4.5 70.7 1.0 CB D:THR85 4.6 72.2 1.0 NZ D:LYS84 4.6 64.6 1.0 CG2 D:ILE179 4.8 54.5 1.0 NH1 D:ARG239 5.0 73.6 1.0

F.Wang, Q.He, H.Li. Cryo-Em Reveals A Nearly Complete Pcna Loading Process and Unique Features of the Human Alternative Clamp Loader CTF18-Rfc Proc.Natl.Acad.Sci.Usa 2024.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.2319727121