Magnesium in PDB 8unj: Atomic Model of the Human CTF18-Rfc Alone in the Apo State (State 1)

The binding sites of Magnesium atom in the Atomic Model of the Human CTF18-Rfc Alone in the Apo State (State 1) (pdb code 8unj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Atomic Model of the Human CTF18-Rfc Alone in the Apo State (State 1), PDB code: 8unj:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Atomic Model of the Human CTF18-Rfc Alone in the Apo State (State 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Atomic Model of the Human CTF18-Rfc Alone in the Apo State (State 1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:110.1 occ:1.00 O2G B:AGS402 2.1 123.3 1.0 OG1 B:THR83 2.1 124.8 1.0 OD2 B:ASP141 2.7 138.0 1.0 OD1 B:ASP141 3.1 138.0 1.0 CG B:ASP141 3.2 138.0 1.0 CB B:THR83 3.3 124.8 1.0 O1B B:AGS402 3.5 123.3 1.0 PG B:AGS402 3.6 123.3 1.0 CG2 B:THR83 3.9 124.8 1.0 O3G B:AGS402 4.2 123.3 1.0 OE2 B:GLU142 4.2 136.3 1.0 O1A B:AGS402 4.4 123.3 1.0 CA B:THR83 4.5 124.8 1.0 PB B:AGS402 4.6 123.3 1.0 O3B B:AGS402 4.6 123.3 1.0 CD B:GLU142 4.6 136.3 1.0 S1G B:AGS402 4.6 123.3 1.0 CG B:GLU142 4.7 136.3 1.0 CB B:ASP141 4.7 138.0 1.0 N B:THR83 4.7 124.8 1.0

Magnesium binding site 2 out of 3 in the Atomic Model of the Human CTF18-Rfc Alone in the Apo State (State 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Atomic Model of the Human CTF18-Rfc Alone in the Apo State (State 1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:65.8 occ:1.00 O3G C:AGS402 2.1 75.9 1.0 O1B C:AGS402 3.0 75.9 1.0 OG1 C:THR67 3.0 66.7 1.0 O1A C:AGS402 3.6 75.9 1.0 PG C:AGS402 3.6 75.9 1.0 CB C:THR67 3.8 66.7 1.0 NH1 D:ARG165 3.9 79.2 1.0 OD2 C:ASP125 3.9 94.7 1.0 PB C:AGS402 4.0 75.9 1.0 CG2 C:THR67 4.1 66.7 1.0 CZ D:ARG165 4.3 79.2 1.0 OD1 C:ASP125 4.3 94.7 1.0 O3B C:AGS402 4.4 75.9 1.0 O3A C:AGS402 4.4 75.9 1.0 OE2 C:GLU126 4.4 98.2 1.0 PA C:AGS402 4.5 75.9 1.0 S1G C:AGS402 4.5 75.9 1.0 O2G C:AGS402 4.5 75.9 1.0 CG C:ASP125 4.5 94.7 1.0 NH2 D:ARG165 4.5 79.2 1.0 NE D:ARG165 5.0 79.2 1.0

Magnesium binding site 3 out of 3 in the Atomic Model of the Human CTF18-Rfc Alone in the Apo State (State 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Atomic Model of the Human CTF18-Rfc Alone in the Apo State (State 1) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:60.2 occ:1.00 O2B D:AGS402 2.1 55.2 1.0 O2G D:AGS402 2.2 55.2 1.0 NH1 D:ARG239 2.5 40.9 1.0 NH2 D:ARG239 2.9 40.9 1.0 CZ D:ARG239 2.9 40.9 1.0 PG D:AGS402 2.9 55.2 1.0 O3B D:AGS402 3.1 55.2 1.0 PB D:AGS402 3.2 55.2 1.0 S1G D:AGS402 3.2 55.2 1.0 OG1 D:THR85 3.5 54.3 1.0 NE D:ARG239 4.0 40.9 1.0 O3A D:AGS402 4.1 55.2 1.0 O2A D:AGS402 4.1 55.2 1.0 O1B D:AGS402 4.3 55.2 1.0 O3G D:AGS402 4.4 55.2 1.0 CB D:THR85 4.5 54.3 1.0 PA D:AGS402 4.6 55.2 1.0 CD D:ARG239 4.7 40.9 1.0 O1A D:AGS402 4.8 55.2 1.0 OE2 D:GLU151 4.9 51.0 1.0 OD1 D:ASP150 4.9 56.5 1.0

F.Wang, Q.He, H.Li. Cryo-Em Reveals A Nearly Complete Pcna Loading Process and Unique Features of the Human Alternative Clamp Loader CTF18-Rfc Proc.Natl.Acad.Sci.Usa 2024.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.2319727121