Magnesium in PDB 8urq: SPO11 Core Complex with Gapped Dna

The binding sites of Magnesium atom in the SPO11 Core Complex with Gapped Dna (pdb code 8urq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the SPO11 Core Complex with Gapped Dna, PDB code: 8urq:

Magnesium binding site 1 out of 1 in the SPO11 Core Complex with Gapped Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of SPO11 Core Complex with Gapped Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:22.1 occ:1.00 OD2 A:ASP288 1.8 12.9 1.0 OD2 A:ASP290 1.9 14.0 1.0 CG A:ASP288 2.5 18.6 1.0 OD1 A:ASP288 2.7 20.2 1.0 CG A:ASP290 2.8 29.4 1.0 OD1 A:ASP290 3.0 27.9 1.0 NZ A:LYS234 3.1 25.1 1.0 CB A:ASP288 3.9 13.2 1.0 CE A:LYS234 4.0 18.9 1.0 OE1 A:GLU386 4.0 32.2 1.0 OE1 A:GLU233 4.2 16.8 1.0 CB A:ASP290 4.2 19.8 1.0 O3' D:DC71 4.2 20.0 1.0 C3' D:DC71 4.3 20.0 1.0 OE2 A:GLU233 4.4 13.1 1.0 CD A:LYS234 4.4 14.7 1.0 C5' D:DC71 4.5 20.0 1.0 CD A:GLU233 4.5 6.2 1.0 C4' D:DC71 4.7 20.0 1.0 CD A:GLU386 4.8 34.4 1.0 CA A:ASP288 5.0 3.1 1.0

Y.Yu, J.C.Wang, K.X.Liu, Z.Zheng, D.J.Patel, S.Keeney. Cryo-Em Structure of the Yeast SPO11 Core Complex Bound to Dna To Be Published.