Magnesium in PDB 8utq: KIF1A[1-393] Amp-Pnp Bound One-Head-Bound State in Complex with A Microtubule - Class T1L02*

The binding sites of Magnesium atom in the KIF1A[1-393] Amp-Pnp Bound One-Head-Bound State in Complex with A Microtubule - Class T1L02* (pdb code 8utq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the KIF1A[1-393] Amp-Pnp Bound One-Head-Bound State in Complex with A Microtubule - Class T1L02*, PDB code: 8utq:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the KIF1A[1-393] Amp-Pnp Bound One-Head-Bound State in Complex with A Microtubule - Class T1L02*


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of KIF1A[1-393] Amp-Pnp Bound One-Head-Bound State in Complex with A Microtubule - Class T1L02* within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg501 b:146.3 occ:1.00 O2B K:ANP502 2.0 147.8 1.0 O3G K:ANP502 2.2 147.8 1.0 O1G K:ANP502 2.3 147.8 1.0 PG K:ANP502 2.4 147.8 1.0 N3B K:ANP502 2.6 147.8 1.0 CB K:LYS103 2.6 138.3 1.0 PB K:ANP502 2.7 147.8 1.0 CA K:LYS103 3.1 138.3 1.0 N K:LYS103 3.2 138.3 1.0 C K:LYS103 3.3 138.3 1.0 N K:SER104 3.4 145.6 1.0 O1B K:ANP502 3.5 147.8 1.0 NZ K:LYS103 3.7 138.3 1.0 OG K:SER104 3.7 145.6 1.0 CE K:LYS103 3.8 138.3 1.0 CG K:LYS103 3.8 138.3 1.0 O2G K:ANP502 3.9 147.8 1.0 O3A K:ANP502 4.0 147.8 1.0 O K:LYS103 4.1 138.3 1.0 CD K:LYS103 4.2 138.3 1.0 OD1 K:ASP248 4.3 127.2 1.0 CA K:SER104 4.3 145.6 1.0 CB K:SER104 4.3 145.6 1.0 C K:GLY102 4.4 143.2 1.0 N K:GLY102 4.9 143.2 1.0 CA K:GLY102 5.0 143.2 1.0

Magnesium binding site 2 out of 3 in the KIF1A[1-393] Amp-Pnp Bound One-Head-Bound State in Complex with A Microtubule - Class T1L02*


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of KIF1A[1-393] Amp-Pnp Bound One-Head-Bound State in Complex with A Microtubule - Class T1L02* within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:79.2 occ:1.00 O3B A:GTP501 1.9 81.0 1.0 O1A A:GTP501 1.9 81.0 1.0 CG2 A:THR145 2.3 81.0 1.0 PA A:GTP501 2.3 81.0 1.0 PB A:GTP501 2.4 81.0 1.0 O2A A:GTP501 2.5 81.0 1.0 O3A A:GTP501 2.5 81.0 1.0 O2B A:GTP501 2.6 81.0 1.0 PG A:GTP501 2.8 81.0 1.0 O3G A:GTP501 2.9 81.0 1.0 O2G A:GTP501 3.5 81.0 1.0 CB A:THR145 3.7 81.0 1.0 O1B A:GTP501 3.8 81.0 1.0 CA A:GLY10 3.8 78.7 1.0 O5' A:GTP501 3.9 81.0 1.0 N A:GLN11 3.9 79.5 1.0 N A:GLY146 4.0 79.8 1.0 O1G A:GTP501 4.1 81.0 1.0 N A:THR145 4.2 81.0 1.0 CA A:THR145 4.4 81.0 1.0 C A:GLY10 4.5 78.7 1.0 OD2 A:ASP98 4.5 85.8 1.0 OD1 A:ASP98 4.5 85.8 1.0 C A:THR145 4.6 81.0 1.0 OG1 A:THR145 4.7 81.0 1.0 C5' A:GTP501 4.7 81.0 1.0 CA A:GLY143 4.8 79.6 1.0 N A:GLY144 4.9 80.4 1.0 CG A:ASP98 4.9 85.8 1.0 CA A:GLY146 5.0 79.8 1.0 CB A:GLN11 5.0 79.5 1.0 C A:GLY143 5.0 79.6 1.0

Magnesium binding site 3 out of 3 in the KIF1A[1-393] Amp-Pnp Bound One-Head-Bound State in Complex with A Microtubule - Class T1L02*


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of KIF1A[1-393] Amp-Pnp Bound One-Head-Bound State in Complex with A Microtubule - Class T1L02* within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:82.0 occ:1.00 O1B E:GTP501 1.9 80.6 1.0 O1G E:GTP501 2.0 80.6 1.0 O3B E:GTP501 2.0 80.6 1.0 PG E:GTP501 2.3 80.6 1.0 PB E:GTP501 2.4 80.6 1.0 OE2 E:GLU71 2.4 84.1 1.0 CD E:GLU71 2.7 84.1 1.0 OE1 E:GLU71 2.9 84.1 1.0 O2G E:GTP501 3.0 80.6 1.0 O2B E:GTP501 3.3 80.6 1.0 O3A E:GTP501 3.7 80.6 1.0 CG E:GLU71 3.7 84.1 1.0 O3G E:GTP501 3.7 80.6 1.0 OG1 E:THR145 3.9 80.2 1.0 OD1 E:ASP69 4.1 81.3 1.0 CB E:THR145 4.4 80.2 1.0 OD2 E:ASP98 4.6 82.9 1.0 NZ I:LYS252 4.6 91.4 1.0 CB E:ASP98 4.6 82.9 1.0 N E:GLN11 4.8 80.1 1.0 CB E:GLU71 4.9 84.1 1.0

M.P.M.H.Benoit, L.Rao, A.B.Asenjo, A.Gennerich, H.Sosa. Cryo-Em of Human KIF1A Reveals Its Mechanism of Motility and the Effect of Its Pathogenic Variant P305L To Be Published.