Magnesium in PDB 8utv: KIF1A[1-393] P305L Mutant Adp Bound in Complex with A Microtubule

The binding sites of Magnesium atom in the KIF1A[1-393] P305L Mutant Adp Bound in Complex with A Microtubule (pdb code 8utv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the KIF1A[1-393] P305L Mutant Adp Bound in Complex with A Microtubule, PDB code: 8utv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the KIF1A[1-393] P305L Mutant Adp Bound in Complex with A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of KIF1A[1-393] P305L Mutant Adp Bound in Complex with A Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:83.8 occ:1.00 OD2 E:ASP69 2.2 76.0 1.0 O E:GLU71 2.3 77.1 1.0 CB E:GLU71 2.4 77.1 1.0 CG E:GLU71 2.6 77.1 1.0 CG E:ASP69 2.8 76.0 1.0 C E:GLU71 2.9 77.1 1.0 CA E:GLU71 3.0 77.1 1.0 CD E:GLU71 3.1 77.1 1.0 OE2 E:GLU71 3.2 77.1 1.0 OD1 E:ASP69 3.3 76.0 1.0 N E:GLU71 3.3 77.1 1.0 CG1 E:VAL74 3.3 74.5 1.0 CB E:ASP69 3.9 76.0 1.0 N E:VAL74 3.9 74.5 1.0 OE1 E:GLU71 4.1 77.1 1.0 CB E:VAL74 4.1 74.5 1.0 N E:PRO72 4.1 75.1 1.0 N E:THR73 4.2 75.2 1.0 C E:LEU70 4.5 75.7 1.0 CA E:VAL74 4.6 74.5 1.0 C E:PRO72 4.7 75.1 1.0 CA E:PRO72 4.8 75.1 1.0 N E:LEU70 4.8 75.7 1.0 C E:THR73 4.9 75.2 1.0 CA E:THR73 4.9 75.2 1.0

Magnesium binding site 2 out of 2 in the KIF1A[1-393] P305L Mutant Adp Bound in Complex with A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of KIF1A[1-393] P305L Mutant Adp Bound in Complex with A Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:82.5 occ:1.00 OD2 A:ASP69 2.2 77.8 1.0 O A:GLU71 2.3 78.6 1.0 CB A:GLU71 2.8 78.6 1.0 CG A:ASP69 3.0 77.8 1.0 C A:GLU71 3.1 78.6 1.0 CG1 A:VAL74 3.3 76.0 1.0 OE1 A:GLU71 3.3 78.6 1.0 CA A:GLU71 3.3 78.6 1.0 OD1 A:ASP69 3.5 77.8 1.0 N A:GLU71 3.7 78.6 1.0 CG A:GLU71 3.7 78.6 1.0 CD A:GLU71 3.8 78.6 1.0 N A:VAL74 3.8 76.0 1.0 CB A:ASP69 4.0 77.8 1.0 N A:THR73 4.0 76.3 1.0 CB A:VAL74 4.1 76.0 1.0 N A:PRO72 4.3 76.3 1.0 CA A:VAL74 4.6 76.0 1.0 CB A:THR73 4.7 76.3 1.0 C A:PRO72 4.7 76.3 1.0 CA A:THR73 4.7 76.3 1.0 C A:THR73 4.7 76.3 1.0 C A:LEU70 4.8 79.8 1.0 OE2 A:GLU71 4.8 78.6 1.0 CA A:PRO72 4.9 76.3 1.0 ND2 B:ASN247 4.9 75.1 1.0 N A:ILE75 5.0 75.8 1.0

M.P.M.H.Benoit, L.Rao, A.B.Asenjo, A.Gennerich, H.Sosa. Cryo-Em of Human KIF1A Reveals Its Mechanism of Motility and the Effect of Its Pathogenic Variant P305L To Be Published.