Magnesium in PDB 8uv3: Murine Norovirus Capsid Protein + 1 Mm MGCL2

The binding sites of Magnesium atom in the Murine Norovirus Capsid Protein + 1 Mm MGCL2 (pdb code 8uv3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Murine Norovirus Capsid Protein + 1 Mm MGCL2, PDB code: 8uv3:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Murine Norovirus Capsid Protein + 1 Mm MGCL2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Murine Norovirus Capsid Protein + 1 Mm MGCL2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:67.0 occ:1.00 O A:HOH755 1.9 58.0 1.0 OD2 A:ASP440 2.1 103.1 1.0 OE1 A:GLN438 2.6 93.5 1.0 CG A:ASP440 3.3 103.1 1.0 CD A:GLN438 3.4 93.5 1.0 NE2 A:GLN438 3.5 93.5 1.0 OE1 A:GLU447 3.9 86.0 1.0 CB A:ASP440 4.2 103.1 1.0 OD1 A:ASP440 4.2 103.1 1.0 O A:HOH761 4.3 62.8 1.0 O A:HOH766 4.4 68.1 1.0 O A:ALA445 4.5 91.4 1.0 CB A:GLU447 4.7 86.0 1.0 O A:ASP443 4.7 95.8 1.0 CG A:GLN438 4.7 93.5 1.0 CD A:GLU447 4.9 86.0 1.0

Magnesium binding site 2 out of 3 in the Murine Norovirus Capsid Protein + 1 Mm MGCL2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Murine Norovirus Capsid Protein + 1 Mm MGCL2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:63.9 occ:1.00 O B:HOH706 1.9 67.2 1.0 OD2 B:ASP440 2.3 81.6 1.0 O B:HOH793 2.6 57.3 1.0 OE1 B:GLU447 3.3 82.0 1.0 CG B:ASP440 3.5 81.6 1.0 OE1 B:GLN438 3.5 74.2 1.0 O B:HOH704 3.6 53.4 1.0 OD2 B:ASP443 3.7 82.4 1.0 OD1 B:ASP440 4.0 81.6 1.0 CB B:ASP443 4.3 82.4 1.0 CD B:GLU447 4.4 82.0 1.0 CG B:ASP443 4.5 82.4 1.0 O B:HOH726 4.5 63.1 1.0 O B:HOH765 4.5 66.8 1.0 CD B:GLN438 4.5 74.2 1.0 CB B:ASP440 4.6 81.6 1.0 NE2 B:GLN438 4.8 74.2 1.0 OE2 B:GLU447 4.9 82.0 1.0

Magnesium binding site 3 out of 3 in the Murine Norovirus Capsid Protein + 1 Mm MGCL2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Murine Norovirus Capsid Protein + 1 Mm MGCL2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:64.1 occ:1.00 O C:HOH742 1.9 55.7 1.0 OE1 C:GLN438 1.9 91.4 1.0 CD C:GLN438 2.9 91.4 1.0 OD2 C:ASP440 3.1 104.5 1.0 O C:HOH769 3.2 48.2 1.0 OE2 C:GLU447 3.4 103.8 1.0 NE2 C:GLN438 3.6 91.4 1.0 CG C:GLU447 3.6 103.8 1.0 O C:ALA445 3.9 94.9 1.0 CD C:GLU447 3.9 103.8 1.0 CG C:GLN438 4.0 91.4 1.0 CG C:ASP440 4.1 104.5 1.0 CB C:ASP440 4.4 104.5 1.0 CB C:ASP443 4.8 92.8 1.0 CB C:GLU447 4.9 103.8 1.0

M.Sherman, F.Cox, M.Habib, S.Karst, C.E.Wobus, T.J.Smith. The Reversible Activation of Norovirus By Metal Ions. J.Virol. 2024.
ISSN: ESSN 1098-5514