Magnesium in PDB 8uxx: ARP2/3 Branch Junction Complex, Befx State
Other elements in 8uxx:
The structure of ARP2/3 Branch Junction Complex, Befx State also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the ARP2/3 Branch Junction Complex, Befx State
(pdb code 8uxx). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 10 binding sites of Magnesium where determined in the
ARP2/3 Branch Junction Complex, Befx State, PDB code: 8uxx:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 1 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg502
b:25.1
occ:1.00
|
F2
|
A:BEF503
|
1.9
|
23.5
|
1.0
|
|
O2B
|
A:ADP501
|
1.9
|
22.7
|
1.0
|
|
O
|
A:HOH602
|
2.0
|
33.6
|
1.0
|
|
O
|
A:HOH603
|
2.2
|
28.9
|
1.0
|
|
O
|
A:HOH601
|
2.2
|
33.4
|
1.0
|
|
H1
|
A:HOH605
|
2.2
|
32.9
|
1.0
|
|
H2
|
A:HOH603
|
2.2
|
28.9
|
1.0
|
|
H2
|
A:HOH605
|
2.4
|
32.9
|
1.0
|
|
O
|
A:HOH605
|
2.5
|
32.9
|
1.0
|
|
H2
|
A:HOH602
|
2.5
|
33.6
|
1.0
|
|
H2
|
A:HOH601
|
2.6
|
33.4
|
1.0
|
|
H1
|
A:HOH603
|
2.6
|
28.9
|
1.0
|
|
H1
|
A:HOH602
|
2.8
|
33.6
|
1.0
|
|
BE
|
A:BEF503
|
3.0
|
23.5
|
1.0
|
|
H2
|
A:HOH604
|
3.0
|
32.9
|
1.0
|
|
O1B
|
A:ADP501
|
3.0
|
22.7
|
1.0
|
|
PB
|
A:ADP501
|
3.0
|
22.7
|
1.0
|
|
H1
|
A:HOH601
|
3.1
|
33.4
|
1.0
|
|
HA3
|
A:GLY187
|
3.3
|
95.7
|
1.0
|
|
HZ2
|
A:LYS18
|
3.4
|
85.5
|
1.0
|
|
HZ1
|
A:LYS18
|
3.5
|
85.5
|
1.0
|
|
H1
|
A:HOH604
|
3.6
|
32.9
|
1.0
|
|
O
|
A:HOH604
|
3.7
|
32.9
|
1.0
|
|
O3A
|
A:ADP501
|
3.7
|
22.7
|
1.0
|
|
HA2
|
A:GLY13
|
3.8
|
96.1
|
1.0
|
|
OE1
|
A:GLN160
|
3.9
|
96.7
|
1.0
|
|
HE22
|
A:GLN160
|
3.9
|
96.7
|
1.0
|
|
F1
|
A:BEF503
|
3.9
|
23.5
|
1.0
|
|
HA3
|
A:GLY13
|
3.9
|
96.1
|
1.0
|
|
F3
|
A:BEF503
|
4.0
|
23.5
|
1.0
|
|
O1A
|
A:ADP501
|
4.0
|
22.7
|
1.0
|
|
NZ
|
A:LYS18
|
4.0
|
85.5
|
1.0
|
|
OD2
|
A:ASP11
|
4.0
|
94.9
|
1.0
|
|
CA
|
A:GLY187
|
4.2
|
95.7
|
1.0
|
|
O3B
|
A:ADP501
|
4.3
|
22.7
|
1.0
|
|
HA2
|
A:GLY187
|
4.3
|
95.7
|
1.0
|
|
PA
|
A:ADP501
|
4.3
|
22.7
|
1.0
|
|
HZ3
|
A:LYS18
|
4.3
|
85.5
|
1.0
|
|
NE2
|
A:GLN160
|
4.3
|
96.7
|
1.0
|
|
H
|
A:ASP188
|
4.4
|
99.2
|
1.0
|
|
CD
|
A:GLN160
|
4.4
|
96.7
|
1.0
|
|
CA
|
A:GLY13
|
4.4
|
96.1
|
1.0
|
|
OD1
|
A:ASP11
|
4.6
|
94.9
|
1.0
|
|
OD2
|
A:ASP185
|
4.6
|
98.1
|
1.0
|
|
H
|
A:THR14
|
4.6
|
92.1
|
1.0
|
|
HG22
|
A:VAL386
|
4.7
|
89.9
|
1.0
|
|
CG
|
A:ASP11
|
4.7
|
94.9
|
1.0
|
|
N
|
A:GLY187
|
4.8
|
95.7
|
1.0
|
|
H
|
A:GLY187
|
4.9
|
95.7
|
1.0
|
|
O2A
|
A:ADP501
|
5.0
|
22.7
|
1.0
|
|
Magnesium binding site 2 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 2 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg901
b:103.5
occ:1.00
|
O1G
|
B:ATP902
|
1.9
|
92.9
|
1.0
|
|
O2B
|
B:ATP902
|
2.0
|
92.9
|
1.0
|
|
PG
|
B:ATP902
|
3.1
|
92.9
|
1.0
|
|
PB
|
B:ATP902
|
3.2
|
92.9
|
1.0
|
|
O3B
|
B:ATP902
|
3.5
|
92.9
|
1.0
|
|
HG22
|
B:VAL350
|
3.6
|
89.2
|
1.0
|
|
HA3
|
B:GLY156
|
3.6
|
91.2
|
1.0
|
|
HZ3
|
B:LYS16
|
3.7
|
94.3
|
1.0
|
|
OE1
|
B:GLN137
|
3.8
|
95.5
|
1.0
|
|
O2G
|
B:ATP902
|
3.8
|
92.9
|
1.0
|
|
OD2
|
B:ASP154
|
3.8
|
92.4
|
1.0
|
|
O2A
|
B:ATP902
|
3.8
|
92.9
|
1.0
|
|
OD2
|
B:ASP9
|
3.8
|
100.6
|
1.0
|
|
HZ1
|
B:LYS16
|
3.9
|
94.3
|
1.0
|
|
O3A
|
B:ATP902
|
4.0
|
92.9
|
1.0
|
|
HE22
|
B:GLN137
|
4.0
|
95.5
|
1.0
|
|
CD
|
B:GLN137
|
4.1
|
95.5
|
1.0
|
|
O3G
|
B:ATP902
|
4.2
|
92.9
|
1.0
|
|
HA3
|
B:GLY11
|
4.2
|
98.2
|
1.0
|
|
NE2
|
B:GLN137
|
4.2
|
95.5
|
1.0
|
|
HA2
|
B:GLY11
|
4.3
|
98.2
|
1.0
|
|
NZ
|
B:LYS16
|
4.3
|
94.3
|
1.0
|
|
O1B
|
B:ATP902
|
4.3
|
92.9
|
1.0
|
|
HG12
|
B:VAL350
|
4.4
|
89.2
|
1.0
|
|
HA2
|
B:GLY156
|
4.4
|
91.2
|
1.0
|
|
PA
|
B:ATP902
|
4.4
|
92.9
|
1.0
|
|
OD1
|
B:ASP9
|
4.5
|
100.6
|
1.0
|
|
CA
|
B:GLY156
|
4.5
|
91.2
|
1.0
|
|
CG2
|
B:VAL350
|
4.6
|
89.2
|
1.0
|
|
CG
|
B:ASP9
|
4.6
|
100.6
|
1.0
|
|
HB3
|
B:GLN137
|
4.6
|
95.5
|
1.0
|
|
HB
|
B:VAL350
|
4.6
|
89.2
|
1.0
|
|
H
|
B:ASP157
|
4.8
|
91.6
|
1.0
|
|
CG
|
B:ASP154
|
4.8
|
92.4
|
1.0
|
|
H
|
B:THR12
|
4.8
|
94.6
|
1.0
|
|
HE2
|
B:HIS161
|
4.8
|
90.9
|
1.0
|
|
HZ2
|
B:LYS16
|
4.8
|
94.3
|
1.0
|
|
CA
|
B:GLY11
|
4.8
|
98.2
|
1.0
|
|
HG21
|
B:VAL350
|
4.8
|
89.2
|
1.0
|
|
HE21
|
B:GLN137
|
4.8
|
95.5
|
1.0
|
|
O1A
|
B:ATP902
|
4.9
|
92.9
|
1.0
|
|
OD1
|
B:ASP154
|
5.0
|
92.4
|
1.0
|
|
HG2
|
B:GLN137
|
5.0
|
95.5
|
1.0
|
|
HA2
|
B:GLY301
|
5.0
|
91.5
|
1.0
|
|
Magnesium binding site 3 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 3 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg801
b:105.2
occ:1.00
|
O3B
|
H:ADP802
|
1.9
|
94.7
|
1.0
|
|
O1B
|
H:ADP802
|
2.0
|
94.7
|
1.0
|
|
PB
|
H:ADP802
|
2.5
|
94.7
|
1.0
|
|
HA3
|
H:GLY156
|
3.2
|
93.8
|
1.0
|
|
HE22
|
H:GLN137
|
3.3
|
101.5
|
1.0
|
|
O3A
|
H:ADP802
|
3.3
|
94.7
|
1.0
|
|
HG
|
H:SER14
|
3.4
|
93.1
|
1.0
|
|
H
|
H:SER14
|
3.4
|
93.1
|
1.0
|
|
HA2
|
H:GLY13
|
3.5
|
96.7
|
1.0
|
|
NE2
|
H:GLN137
|
3.6
|
101.5
|
1.0
|
|
O2B
|
H:ADP802
|
3.7
|
94.7
|
1.0
|
|
O1A
|
H:ADP802
|
3.8
|
94.7
|
1.0
|
|
HZ3
|
H:LYS18
|
3.8
|
98.3
|
1.0
|
|
HE21
|
H:GLN137
|
3.8
|
101.5
|
1.0
|
|
H
|
H:ASP157
|
3.9
|
93.2
|
1.0
|
|
HA2
|
H:GLY156
|
3.9
|
93.8
|
1.0
|
|
CA
|
H:GLY156
|
4.0
|
93.8
|
1.0
|
|
PA
|
H:ADP802
|
4.0
|
94.7
|
1.0
|
|
HZ1
|
H:LYS18
|
4.1
|
98.3
|
1.0
|
|
CD
|
H:GLN137
|
4.2
|
101.5
|
1.0
|
|
OG
|
H:SER14
|
4.3
|
93.1
|
1.0
|
|
N
|
H:SER14
|
4.4
|
93.1
|
1.0
|
|
OE1
|
H:GLN137
|
4.4
|
101.5
|
1.0
|
|
NZ
|
H:LYS18
|
4.5
|
98.3
|
1.0
|
|
OD2
|
H:ASP154
|
4.5
|
101.7
|
1.0
|
|
HG23
|
H:VAL339
|
4.5
|
101.4
|
1.0
|
|
OD2
|
H:ASP11
|
4.5
|
104.2
|
1.0
|
|
CA
|
H:GLY13
|
4.5
|
96.7
|
1.0
|
|
O2A
|
H:ADP802
|
4.7
|
94.7
|
1.0
|
|
N
|
H:ASP157
|
4.8
|
93.2
|
1.0
|
|
HA3
|
H:GLY13
|
4.8
|
96.7
|
1.0
|
|
N
|
H:GLY156
|
4.9
|
93.8
|
1.0
|
|
HZ2
|
H:LYS18
|
4.9
|
98.3
|
1.0
|
|
HB3
|
H:SER14
|
4.9
|
93.1
|
1.0
|
|
OD1
|
H:ASP11
|
4.9
|
104.2
|
1.0
|
|
HG22
|
H:VAL159
|
4.9
|
89.7
|
1.0
|
|
Magnesium binding site 4 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 4 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg801
b:131.9
occ:1.00
|
O1B
|
I:ADP802
|
1.9
|
109.5
|
1.0
|
|
OD2
|
I:ASP11
|
1.9
|
128.8
|
1.0
|
|
O2B
|
I:ADP802
|
1.9
|
109.5
|
1.0
|
|
PB
|
I:ADP802
|
2.5
|
109.5
|
1.0
|
|
CG
|
I:ASP11
|
3.0
|
128.8
|
1.0
|
|
HE21
|
I:GLN137
|
3.2
|
128.9
|
1.0
|
|
HE22
|
I:GLN137
|
3.3
|
128.9
|
1.0
|
|
HA2
|
I:GLY13
|
3.3
|
116.9
|
1.0
|
|
NE2
|
I:GLN137
|
3.4
|
128.9
|
1.0
|
|
OD1
|
I:ASP11
|
3.4
|
128.8
|
1.0
|
|
HZ3
|
I:LYS18
|
3.5
|
125.9
|
1.0
|
|
O3B
|
I:ADP802
|
3.5
|
109.5
|
1.0
|
|
HG23
|
I:VAL339
|
3.6
|
121.0
|
1.0
|
|
HE2
|
I:LYS18
|
3.6
|
125.9
|
1.0
|
|
O1A
|
I:ADP802
|
3.6
|
109.5
|
1.0
|
|
O3A
|
I:ADP802
|
3.7
|
109.5
|
1.0
|
|
HA3
|
I:GLY13
|
3.8
|
116.9
|
1.0
|
|
PA
|
I:ADP802
|
4.0
|
109.5
|
1.0
|
|
H
|
I:SER14
|
4.1
|
110.1
|
1.0
|
|
CA
|
I:GLY13
|
4.1
|
116.9
|
1.0
|
|
NZ
|
I:LYS18
|
4.2
|
125.9
|
1.0
|
|
HZ1
|
I:LYS18
|
4.2
|
125.9
|
1.0
|
|
CB
|
I:ASP11
|
4.3
|
128.8
|
1.0
|
|
CE
|
I:LYS18
|
4.3
|
125.9
|
1.0
|
|
HB3
|
I:ASP11
|
4.3
|
128.8
|
1.0
|
|
CD
|
I:GLN137
|
4.3
|
128.9
|
1.0
|
|
O2A
|
I:ADP802
|
4.4
|
109.5
|
1.0
|
|
HA3
|
I:GLY156
|
4.4
|
111.7
|
1.0
|
|
HG11
|
I:VAL339
|
4.5
|
121.0
|
1.0
|
|
CG2
|
I:VAL339
|
4.6
|
121.0
|
1.0
|
|
HB
|
I:VAL339
|
4.6
|
121.0
|
1.0
|
|
HE3
|
I:LYS18
|
4.7
|
125.9
|
1.0
|
|
HA2
|
I:GLY156
|
4.7
|
111.7
|
1.0
|
|
HG2
|
I:GLN137
|
4.8
|
128.9
|
1.0
|
|
HB2
|
I:ASP11
|
4.9
|
128.8
|
1.0
|
|
N
|
I:SER14
|
4.9
|
110.1
|
1.0
|
|
N
|
I:GLY13
|
4.9
|
116.9
|
1.0
|
|
OE1
|
I:GLN137
|
5.0
|
128.9
|
1.0
|
|
HG1
|
I:THR106
|
5.0
|
126.2
|
1.0
|
|
HG21
|
I:VAL339
|
5.0
|
121.0
|
1.0
|
|
Magnesium binding site 5 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 5 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg402
b:25.1
occ:1.00
|
F2
|
M:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
M:ADP401
|
1.9
|
22.7
|
1.0
|
|
O3B
|
M:ADP401
|
2.2
|
22.7
|
1.0
|
|
BE
|
M:BEF403
|
2.4
|
23.5
|
1.0
|
|
PB
|
M:ADP401
|
2.6
|
22.7
|
1.0
|
|
HE22
|
M:GLN137
|
3.1
|
89.1
|
1.0
|
|
HZ1
|
M:LYS18
|
3.2
|
94.3
|
1.0
|
|
F3
|
M:BEF403
|
3.2
|
23.5
|
1.0
|
|
HA3
|
M:GLY156
|
3.3
|
81.0
|
1.0
|
|
O3A
|
M:ADP401
|
3.4
|
22.7
|
1.0
|
|
F1
|
M:BEF403
|
3.7
|
23.5
|
1.0
|
|
O2A
|
M:ADP401
|
3.7
|
22.7
|
1.0
|
|
OE1
|
M:GLN137
|
3.7
|
89.1
|
1.0
|
|
HA2
|
M:GLY156
|
3.8
|
81.0
|
1.0
|
|
HA3
|
M:GLY13
|
3.8
|
88.8
|
1.0
|
|
O1B
|
M:ADP401
|
3.9
|
22.7
|
1.0
|
|
NE2
|
M:GLN137
|
3.9
|
89.1
|
1.0
|
|
H
|
M:SER14
|
3.9
|
84.3
|
1.0
|
|
HA2
|
M:GLY13
|
4.0
|
88.8
|
1.0
|
|
H
|
M:ASP157
|
4.0
|
81.0
|
1.0
|
|
CA
|
M:GLY156
|
4.0
|
81.0
|
1.0
|
|
PA
|
M:ADP401
|
4.1
|
22.7
|
1.0
|
|
NZ
|
M:LYS18
|
4.2
|
94.3
|
1.0
|
|
CD
|
M:GLN137
|
4.2
|
89.1
|
1.0
|
|
HZ2
|
M:LYS18
|
4.3
|
94.3
|
1.0
|
|
CA
|
M:GLY13
|
4.4
|
88.8
|
1.0
|
|
HZ3
|
M:LYS18
|
4.6
|
94.3
|
1.0
|
|
HG23
|
M:VAL339
|
4.6
|
89.0
|
1.0
|
|
HE21
|
M:GLN137
|
4.6
|
89.1
|
1.0
|
|
O1A
|
M:ADP401
|
4.8
|
22.7
|
1.0
|
|
N
|
M:SER14
|
4.8
|
84.3
|
1.0
|
|
N
|
M:ASP157
|
4.8
|
81.0
|
1.0
|
|
OD1
|
M:ASP11
|
4.9
|
98.6
|
1.0
|
|
OD2
|
M:ASP11
|
4.9
|
98.6
|
1.0
|
|
OD1
|
M:ASP154
|
4.9
|
80.8
|
1.0
|
|
HB3
|
M:SER14
|
5.0
|
84.3
|
1.0
|
|
HG11
|
M:VAL159
|
5.0
|
77.4
|
1.0
|
|
HE3
|
M:LYS18
|
5.0
|
94.3
|
1.0
|
|
N
|
M:GLY156
|
5.0
|
81.0
|
1.0
|
|
Magnesium binding site 6 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 6 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Mg402
b:25.1
occ:1.00
|
F2
|
N:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
N:ADP401
|
1.9
|
22.7
|
1.0
|
|
O1B
|
N:ADP401
|
2.3
|
22.7
|
1.0
|
|
BE
|
N:BEF403
|
2.5
|
23.5
|
1.0
|
|
PB
|
N:ADP401
|
2.7
|
22.7
|
1.0
|
|
HE21
|
N:GLN137
|
2.9
|
87.0
|
1.0
|
|
HA2
|
N:GLY13
|
3.3
|
86.5
|
1.0
|
|
HA3
|
N:GLY156
|
3.3
|
81.3
|
1.0
|
|
NE2
|
N:GLN137
|
3.3
|
87.0
|
1.0
|
|
F3
|
N:BEF403
|
3.4
|
23.5
|
1.0
|
|
HZ2
|
N:LYS18
|
3.4
|
88.5
|
1.0
|
|
O3A
|
N:ADP401
|
3.5
|
22.7
|
1.0
|
|
HE22
|
N:GLN137
|
3.5
|
87.0
|
1.0
|
|
F1
|
N:BEF403
|
3.8
|
23.5
|
1.0
|
|
O3B
|
N:ADP401
|
3.8
|
22.7
|
1.0
|
|
HA3
|
N:GLY13
|
3.9
|
86.5
|
1.0
|
|
H
|
N:SER14
|
3.9
|
81.6
|
1.0
|
|
CA
|
N:GLY13
|
4.1
|
86.5
|
1.0
|
|
O2A
|
N:ADP401
|
4.1
|
22.7
|
1.0
|
|
OD2
|
N:ASP11
|
4.2
|
94.2
|
1.0
|
|
H
|
N:ASP157
|
4.2
|
80.5
|
1.0
|
|
CA
|
N:GLY156
|
4.2
|
81.3
|
1.0
|
|
CD
|
N:GLN137
|
4.3
|
87.0
|
1.0
|
|
HA2
|
N:GLY156
|
4.3
|
81.3
|
1.0
|
|
PA
|
N:ADP401
|
4.3
|
22.7
|
1.0
|
|
HG2
|
N:GLN137
|
4.4
|
87.0
|
1.0
|
|
NZ
|
N:LYS18
|
4.4
|
88.5
|
1.0
|
|
HE3
|
N:LYS18
|
4.5
|
88.5
|
1.0
|
|
HZ1
|
N:LYS18
|
4.7
|
88.5
|
1.0
|
|
OD1
|
N:ASP11
|
4.7
|
94.2
|
1.0
|
|
N
|
N:SER14
|
4.7
|
81.6
|
1.0
|
|
CG
|
N:GLN137
|
4.8
|
87.0
|
1.0
|
|
CG
|
N:ASP11
|
4.8
|
94.2
|
1.0
|
|
OD2
|
N:ASP154
|
4.9
|
82.4
|
1.0
|
|
HG22
|
N:VAL339
|
4.9
|
86.6
|
1.0
|
|
HG11
|
N:VAL159
|
4.9
|
77.9
|
1.0
|
|
HG3
|
N:GLN137
|
4.9
|
87.0
|
1.0
|
|
HG
|
N:SER14
|
4.9
|
81.6
|
1.0
|
|
CE
|
N:LYS18
|
4.9
|
88.5
|
1.0
|
|
C
|
N:GLY13
|
4.9
|
86.5
|
1.0
|
|
O1A
|
N:ADP401
|
5.0
|
22.7
|
1.0
|
|
N
|
N:GLY156
|
5.0
|
81.3
|
1.0
|
|
HE2
|
N:LYS18
|
5.0
|
88.5
|
1.0
|
|
Magnesium binding site 7 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 7 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Mg402
b:25.1
occ:1.00
|
F2
|
O:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
O:ADP401
|
1.9
|
22.7
|
1.0
|
|
BE
|
O:BEF403
|
2.9
|
23.5
|
1.0
|
|
PB
|
O:ADP401
|
3.0
|
22.7
|
1.0
|
|
O3B
|
O:ADP401
|
3.0
|
22.7
|
1.0
|
|
HE22
|
O:GLN137
|
3.1
|
79.5
|
1.0
|
|
HA3
|
O:GLY156
|
3.3
|
75.5
|
1.0
|
|
HZ2
|
O:LYS18
|
3.6
|
79.8
|
1.0
|
|
NE2
|
O:GLN137
|
3.6
|
79.5
|
1.0
|
|
O3A
|
O:ADP401
|
3.8
|
22.7
|
1.0
|
|
HA3
|
O:GLY13
|
3.8
|
80.6
|
1.0
|
|
F3
|
O:BEF403
|
3.9
|
23.5
|
1.0
|
|
OD2
|
O:ASP154
|
3.9
|
75.6
|
1.0
|
|
O2A
|
O:ADP401
|
4.0
|
22.7
|
1.0
|
|
F1
|
O:BEF403
|
4.0
|
23.5
|
1.0
|
|
HE21
|
O:GLN137
|
4.1
|
79.5
|
1.0
|
|
OE1
|
O:GLN137
|
4.1
|
79.5
|
1.0
|
|
HA2
|
O:GLY13
|
4.1
|
80.6
|
1.0
|
|
CD
|
O:GLN137
|
4.1
|
79.5
|
1.0
|
|
O1B
|
O:ADP401
|
4.2
|
22.7
|
1.0
|
|
HE3
|
O:LYS18
|
4.2
|
79.8
|
1.0
|
|
CA
|
O:GLY156
|
4.2
|
75.5
|
1.0
|
|
HA2
|
O:GLY156
|
4.2
|
75.5
|
1.0
|
|
PA
|
O:ADP401
|
4.4
|
22.7
|
1.0
|
|
H
|
O:SER14
|
4.5
|
75.7
|
1.0
|
|
NZ
|
O:LYS18
|
4.5
|
79.8
|
1.0
|
|
CA
|
O:GLY13
|
4.5
|
80.6
|
1.0
|
|
H
|
O:ASP157
|
4.5
|
77.1
|
1.0
|
|
HG22
|
O:VAL339
|
4.5
|
73.8
|
1.0
|
|
OD2
|
O:ASP11
|
4.6
|
82.7
|
1.0
|
|
HZ1
|
O:LYS18
|
4.7
|
79.8
|
1.0
|
|
N
|
O:GLY156
|
4.8
|
75.5
|
1.0
|
|
CE
|
O:LYS18
|
4.8
|
79.8
|
1.0
|
|
HG12
|
O:VAL339
|
4.9
|
73.8
|
1.0
|
|
H
|
O:GLY156
|
4.9
|
75.5
|
1.0
|
|
O1A
|
O:ADP401
|
4.9
|
22.7
|
1.0
|
|
OD1
|
O:ASP11
|
5.0
|
82.7
|
1.0
|
|
CG
|
O:ASP154
|
5.0
|
75.6
|
1.0
|
|
Magnesium binding site 8 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 8 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg402
b:25.1
occ:1.00
|
F2
|
P:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
P:ADP401
|
1.9
|
22.7
|
1.0
|
|
BE
|
P:BEF403
|
2.9
|
23.5
|
1.0
|
|
O1B
|
P:ADP401
|
3.0
|
22.7
|
1.0
|
|
PB
|
P:ADP401
|
3.0
|
22.7
|
1.0
|
|
HE22
|
P:GLN137
|
3.0
|
85.0
|
1.0
|
|
HZ2
|
P:LYS18
|
3.4
|
89.1
|
1.0
|
|
NE2
|
P:GLN137
|
3.4
|
85.0
|
1.0
|
|
HA3
|
P:GLY156
|
3.5
|
82.3
|
1.0
|
|
HE21
|
P:GLN137
|
3.7
|
85.0
|
1.0
|
|
O3A
|
P:ADP401
|
3.7
|
22.7
|
1.0
|
|
HA2
|
P:GLY13
|
3.8
|
85.2
|
1.0
|
|
F3
|
P:BEF403
|
3.9
|
23.5
|
1.0
|
|
O1A
|
P:ADP401
|
3.9
|
22.7
|
1.0
|
|
F1
|
P:BEF403
|
4.0
|
23.5
|
1.0
|
|
OD2
|
P:ASP11
|
4.0
|
95.5
|
1.0
|
|
HA3
|
P:GLY13
|
4.2
|
85.2
|
1.0
|
|
O3B
|
P:ADP401
|
4.2
|
22.7
|
1.0
|
|
CD
|
P:GLN137
|
4.2
|
85.0
|
1.0
|
|
PA
|
P:ADP401
|
4.3
|
22.7
|
1.0
|
|
NZ
|
P:LYS18
|
4.3
|
89.1
|
1.0
|
|
HA2
|
P:GLY156
|
4.4
|
82.3
|
1.0
|
|
H
|
P:SER14
|
4.4
|
83.4
|
1.0
|
|
HG23
|
P:VAL339
|
4.4
|
80.6
|
1.0
|
|
CA
|
P:GLY156
|
4.4
|
82.3
|
1.0
|
|
H
|
P:ASP157
|
4.4
|
83.1
|
1.0
|
|
OE1
|
P:GLN137
|
4.5
|
85.0
|
1.0
|
|
OD1
|
P:ASP154
|
4.5
|
78.4
|
1.0
|
|
HZ1
|
P:LYS18
|
4.5
|
89.1
|
1.0
|
|
CA
|
P:GLY13
|
4.5
|
85.2
|
1.0
|
|
OD1
|
P:ASP11
|
4.6
|
95.5
|
1.0
|
|
HG13
|
P:VAL339
|
4.7
|
80.6
|
1.0
|
|
CG
|
P:ASP11
|
4.7
|
95.5
|
1.0
|
|
HZ3
|
P:LYS18
|
4.8
|
89.1
|
1.0
|
|
HA2
|
P:GLY301
|
4.8
|
79.7
|
1.0
|
|
OD2
|
P:ASP154
|
4.9
|
78.4
|
1.0
|
|
HB
|
P:VAL339
|
4.9
|
80.6
|
1.0
|
|
O2A
|
P:ADP401
|
4.9
|
22.7
|
1.0
|
|
Magnesium binding site 9 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 9 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Mg402
b:25.1
occ:1.00
|
F2
|
Q:BEF403
|
1.9
|
23.5
|
1.0
|
|
O2B
|
Q:ADP401
|
1.9
|
22.7
|
1.0
|
|
F3
|
Q:BEF403
|
2.0
|
23.5
|
1.0
|
|
BE
|
Q:BEF403
|
2.3
|
23.5
|
1.0
|
|
HE22
|
Q:GLN137
|
2.7
|
82.5
|
1.0
|
|
O3B
|
Q:ADP401
|
2.9
|
22.7
|
1.0
|
|
PB
|
Q:ADP401
|
3.0
|
22.7
|
1.0
|
|
NE2
|
Q:GLN137
|
3.0
|
82.5
|
1.0
|
|
HA2
|
Q:GLY13
|
3.1
|
78.9
|
1.0
|
|
HZ2
|
Q:LYS18
|
3.1
|
81.0
|
1.0
|
|
HE21
|
Q:GLN137
|
3.2
|
82.5
|
1.0
|
|
OD2
|
Q:ASP11
|
3.3
|
83.3
|
1.0
|
|
F1
|
Q:BEF403
|
3.6
|
23.5
|
1.0
|
|
H
|
Q:SER14
|
3.7
|
76.4
|
1.0
|
|
HA3
|
Q:GLY156
|
3.8
|
78.6
|
1.0
|
|
HA3
|
Q:GLY13
|
3.8
|
78.9
|
1.0
|
|
CD
|
Q:GLN137
|
3.9
|
82.5
|
1.0
|
|
OD1
|
Q:ASP11
|
3.9
|
83.3
|
1.0
|
|
CA
|
Q:GLY13
|
3.9
|
78.9
|
1.0
|
|
O3A
|
Q:ADP401
|
3.9
|
22.7
|
1.0
|
|
CG
|
Q:ASP11
|
4.0
|
83.3
|
1.0
|
|
O1B
|
Q:ADP401
|
4.1
|
22.7
|
1.0
|
|
NZ
|
Q:LYS18
|
4.1
|
81.0
|
1.0
|
|
OE1
|
Q:GLN137
|
4.3
|
82.5
|
1.0
|
|
O2A
|
Q:ADP401
|
4.3
|
22.7
|
1.0
|
|
HZ1
|
Q:LYS18
|
4.4
|
81.0
|
1.0
|
|
HZ3
|
Q:LYS18
|
4.5
|
81.0
|
1.0
|
|
HG22
|
Q:VAL339
|
4.5
|
76.5
|
1.0
|
|
H
|
Q:ASP157
|
4.6
|
80.6
|
1.0
|
|
N
|
Q:SER14
|
4.6
|
76.4
|
1.0
|
|
PA
|
Q:ADP401
|
4.6
|
22.7
|
1.0
|
|
HA2
|
Q:GLY156
|
4.6
|
78.6
|
1.0
|
|
CA
|
Q:GLY156
|
4.7
|
78.6
|
1.0
|
|
HG2
|
Q:GLN137
|
4.8
|
82.5
|
1.0
|
|
C
|
Q:GLY13
|
4.8
|
78.9
|
1.0
|
|
HE3
|
Q:LYS18
|
4.9
|
81.0
|
1.0
|
|
HG11
|
Q:VAL339
|
4.9
|
76.5
|
1.0
|
|
OD2
|
Q:ASP154
|
4.9
|
82.1
|
1.0
|
|
N
|
Q:GLY13
|
4.9
|
78.9
|
1.0
|
|
CG
|
Q:GLN137
|
4.9
|
82.5
|
1.0
|
|
CE
|
Q:LYS18
|
5.0
|
81.0
|
1.0
|
|
HB3
|
Q:GLN137
|
5.0
|
82.5
|
1.0
|
|
Magnesium binding site 10 out
of 10 in 8uxx
Go back to
Magnesium Binding Sites List in 8uxx
Magnesium binding site 10 out
of 10 in the ARP2/3 Branch Junction Complex, Befx State
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of ARP2/3 Branch Junction Complex, Befx State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Mg402
b:25.1
occ:1.00
|
F2
|
R:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
R:ADP401
|
1.9
|
22.7
|
1.0
|
|
HE22
|
R:GLN137
|
2.3
|
98.3
|
1.0
|
|
NE2
|
R:GLN137
|
2.4
|
98.3
|
1.0
|
|
HE21
|
R:GLN137
|
2.7
|
98.3
|
1.0
|
|
BE
|
R:BEF403
|
2.9
|
23.5
|
1.0
|
|
PB
|
R:ADP401
|
3.0
|
22.7
|
1.0
|
|
O3B
|
R:ADP401
|
3.0
|
22.7
|
1.0
|
|
HZ1
|
R:LYS18
|
3.3
|
94.8
|
1.0
|
|
CD
|
R:GLN137
|
3.3
|
98.3
|
1.0
|
|
HA3
|
R:GLY156
|
3.6
|
87.7
|
1.0
|
|
OD2
|
R:ASP11
|
3.6
|
100.8
|
1.0
|
|
F3
|
R:BEF403
|
3.6
|
23.5
|
1.0
|
|
HA2
|
R:GLY13
|
3.7
|
90.8
|
1.0
|
|
OE1
|
R:GLN137
|
3.7
|
98.3
|
1.0
|
|
O3A
|
R:ADP401
|
3.7
|
22.7
|
1.0
|
|
O1A
|
R:ADP401
|
3.9
|
22.7
|
1.0
|
|
OD1
|
R:ASP11
|
4.0
|
100.8
|
1.0
|
|
F1
|
R:BEF403
|
4.1
|
23.5
|
1.0
|
|
O1B
|
R:ADP401
|
4.2
|
22.7
|
1.0
|
|
HG23
|
R:VAL339
|
4.2
|
92.9
|
1.0
|
|
CG
|
R:ASP11
|
4.2
|
100.8
|
1.0
|
|
NZ
|
R:LYS18
|
4.2
|
94.8
|
1.0
|
|
PA
|
R:ADP401
|
4.3
|
22.7
|
1.0
|
|
H
|
R:SER14
|
4.4
|
88.2
|
1.0
|
|
CG
|
R:GLN137
|
4.4
|
98.3
|
1.0
|
|
HG2
|
R:GLN137
|
4.4
|
98.3
|
1.0
|
|
HZ3
|
R:LYS18
|
4.4
|
94.8
|
1.0
|
|
HG11
|
R:VAL339
|
4.5
|
92.9
|
1.0
|
|
HA3
|
R:GLY13
|
4.5
|
90.8
|
1.0
|
|
CA
|
R:GLY156
|
4.5
|
87.7
|
1.0
|
|
HA2
|
R:GLY156
|
4.6
|
87.7
|
1.0
|
|
CA
|
R:GLY13
|
4.6
|
90.8
|
1.0
|
|
HG3
|
R:GLN137
|
4.6
|
98.3
|
1.0
|
|
H
|
R:ASP157
|
4.6
|
88.3
|
1.0
|
|
HZ2
|
R:LYS18
|
4.7
|
94.8
|
1.0
|
|
OD1
|
R:ASP154
|
4.8
|
94.3
|
1.0
|
|
O2A
|
R:ADP401
|
4.9
|
22.7
|
1.0
|
|
HE3
|
R:LYS18
|
5.0
|
94.8
|
1.0
|
|
Reference:
S.S.Chavali,
S.Z.Chou,
W.Cao,
T.D.Pollard,
E.M.De La Cruz,
C.V.Sindelar.
High Resolution Cryo-Em Structures Reveal How Phosphate Release From ARP3 Weakens Actin Filament Branches Formed By the ARP2/3 Complex To Be Published.
Page generated: Fri Oct 4 21:30:13 2024
|
