Magnesium in PDB 8uya: Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
(pdb code 8uya). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp, PDB code: 8uya:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 8uya
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Magnesium Binding Sites List in 8uya
Magnesium binding site 1 out
of 8 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1001
b:36.5
occ:1.00
|
OD1
|
A:ASN709
|
2.0
|
44.6
|
1.0
|
CG
|
A:ASN709
|
3.1
|
44.6
|
1.0
|
ND2
|
A:ASN709
|
3.6
|
44.6
|
1.0
|
CG
|
A:GLN814
|
4.1
|
46.7
|
1.0
|
CB
|
A:SER776
|
4.2
|
58.6
|
1.0
|
CB
|
A:ASN709
|
4.4
|
44.6
|
1.0
|
OG
|
A:SER705
|
4.4
|
42.1
|
1.0
|
CA
|
A:ASN709
|
4.6
|
44.6
|
1.0
|
O
|
A:SER705
|
4.6
|
42.1
|
1.0
|
N
|
A:ASN709
|
4.7
|
44.6
|
1.0
|
OG
|
A:SER776
|
4.7
|
58.6
|
1.0
|
OG
|
A:SER813
|
4.7
|
50.3
|
1.0
|
O
|
A:GLY810
|
4.7
|
52.1
|
1.0
|
NE2
|
A:GLN814
|
4.8
|
46.7
|
1.0
|
CD
|
A:GLN814
|
4.9
|
46.7
|
1.0
|
CA
|
A:GLY810
|
5.0
|
52.1
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 8uya
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Magnesium Binding Sites List in 8uya
Magnesium binding site 2 out
of 8 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1002
b:63.0
occ:1.00
|
OD1
|
A:ASP663
|
2.1
|
38.8
|
1.0
|
OD2
|
A:ASP663
|
2.5
|
38.8
|
1.0
|
CG
|
A:ASP663
|
2.6
|
38.8
|
1.0
|
CB
|
A:ASP663
|
4.1
|
38.8
|
1.0
|
O
|
A:THR156
|
4.5
|
49.0
|
1.0
|
OD1
|
A:ASP191
|
4.5
|
43.4
|
1.0
|
OG1
|
A:THR156
|
4.5
|
49.0
|
1.0
|
CA
|
A:ASP663
|
4.8
|
38.8
|
1.0
|
NH1
|
A:ARG666
|
4.9
|
28.4
|
1.0
|
N
|
A:THR156
|
4.9
|
49.0
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 8uya
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Magnesium Binding Sites List in 8uya
Magnesium binding site 3 out
of 8 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1003
b:60.8
occ:1.00
|
OD1
|
A:ASP441
|
2.8
|
53.7
|
1.0
|
OD2
|
A:ASP441
|
2.8
|
53.7
|
1.0
|
CG
|
A:ASP441
|
3.2
|
53.7
|
1.0
|
O
|
A:GLU442
|
3.7
|
47.5
|
1.0
|
O
|
A:TYR527
|
4.4
|
75.2
|
1.0
|
CB
|
A:ASP526
|
4.5
|
87.1
|
1.0
|
OD2
|
A:ASP526
|
4.5
|
87.1
|
1.0
|
CG
|
A:ASP526
|
4.5
|
87.1
|
1.0
|
CB
|
A:ASP441
|
4.6
|
53.7
|
1.0
|
N
|
A:GLU442
|
4.6
|
47.5
|
1.0
|
N
|
A:TYR527
|
4.7
|
75.2
|
1.0
|
C
|
A:GLU442
|
4.7
|
47.5
|
1.0
|
OD2
|
A:ASP204
|
4.9
|
52.8
|
1.0
|
CZ
|
A:PHE206
|
5.0
|
45.8
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 8uya
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Magnesium Binding Sites List in 8uya
Magnesium binding site 4 out
of 8 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1004
b:42.8
occ:1.00
|
O2B
|
A:ATP1005
|
2.1
|
46.1
|
1.0
|
PB
|
A:ATP1005
|
3.6
|
46.1
|
1.0
|
O3B
|
A:ATP1005
|
4.0
|
46.1
|
1.0
|
OD2
|
A:ASP373
|
4.1
|
28.9
|
1.0
|
O1A
|
A:ATP1005
|
4.3
|
46.1
|
1.0
|
O3A
|
A:ATP1005
|
4.4
|
46.1
|
1.0
|
O2G
|
A:ATP1005
|
4.4
|
46.1
|
1.0
|
OD1
|
A:ASP641
|
4.4
|
23.0
|
1.0
|
O1G
|
A:ATP1005
|
4.5
|
46.1
|
1.0
|
O1B
|
A:ATP1005
|
4.6
|
46.1
|
1.0
|
PG
|
A:ATP1005
|
4.6
|
46.1
|
1.0
|
O
|
A:HOH1102
|
4.6
|
19.9
|
1.0
|
CB
|
A:ASP373
|
4.8
|
28.9
|
1.0
|
PA
|
A:ATP1005
|
4.8
|
46.1
|
1.0
|
O
|
A:THR375
|
4.9
|
25.0
|
1.0
|
CG
|
A:ASP373
|
4.9
|
28.9
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 8uya
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Magnesium Binding Sites List in 8uya
Magnesium binding site 5 out
of 8 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1001
b:35.0
occ:1.00
|
OD1
|
B:ASN709
|
2.0
|
43.8
|
1.0
|
CG
|
B:ASN709
|
3.1
|
43.8
|
1.0
|
ND2
|
B:ASN709
|
3.6
|
43.8
|
1.0
|
CG
|
B:GLN814
|
4.1
|
48.3
|
1.0
|
NE2
|
B:GLN814
|
4.2
|
48.3
|
1.0
|
CB
|
B:ASN709
|
4.4
|
43.8
|
1.0
|
OG
|
B:SER705
|
4.4
|
43.6
|
1.0
|
CB
|
B:SER776
|
4.5
|
57.0
|
1.0
|
O
|
B:SER705
|
4.5
|
43.6
|
1.0
|
CA
|
B:ASN709
|
4.6
|
43.8
|
1.0
|
N
|
B:ASN709
|
4.6
|
43.8
|
1.0
|
CD
|
B:GLN814
|
4.7
|
48.3
|
1.0
|
O
|
B:GLY810
|
4.8
|
52.7
|
1.0
|
OG
|
B:SER813
|
4.8
|
51.1
|
1.0
|
CA
|
B:GLY810
|
5.0
|
52.7
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 8uya
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Magnesium Binding Sites List in 8uya
Magnesium binding site 6 out
of 8 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1002
b:56.3
occ:1.00
|
OD1
|
B:ASP663
|
2.1
|
38.9
|
1.0
|
OD2
|
B:ASP663
|
2.7
|
38.9
|
1.0
|
CG
|
B:ASP663
|
2.7
|
38.9
|
1.0
|
CB
|
B:ASP663
|
4.1
|
38.9
|
1.0
|
OG1
|
B:THR156
|
4.4
|
50.0
|
1.0
|
OD1
|
B:ASP191
|
4.5
|
41.6
|
1.0
|
NH1
|
B:ARG666
|
4.8
|
30.2
|
1.0
|
O
|
B:THR156
|
4.8
|
50.0
|
1.0
|
CA
|
B:ASP663
|
4.8
|
38.9
|
1.0
|
O
|
B:GLY190
|
4.9
|
37.0
|
1.0
|
N
|
B:THR156
|
4.9
|
50.0
|
1.0
|
N
|
B:ASP663
|
5.0
|
38.9
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 8uya
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Magnesium Binding Sites List in 8uya
Magnesium binding site 7 out
of 8 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1003
b:61.3
occ:1.00
|
OD2
|
B:ASP441
|
2.7
|
54.5
|
1.0
|
OD1
|
B:ASP441
|
2.8
|
54.5
|
1.0
|
CG
|
B:ASP441
|
3.1
|
54.5
|
1.0
|
O
|
B:GLU442
|
4.0
|
47.2
|
1.0
|
O
|
B:TYR527
|
4.3
|
77.6
|
1.0
|
CB
|
B:ASP526
|
4.4
|
91.6
|
1.0
|
OD2
|
B:ASP526
|
4.5
|
91.6
|
1.0
|
CG
|
B:ASP526
|
4.5
|
91.6
|
1.0
|
CB
|
B:ASP441
|
4.6
|
54.5
|
1.0
|
N
|
B:TYR527
|
4.6
|
77.6
|
1.0
|
N
|
B:GLU442
|
4.7
|
47.2
|
1.0
|
C
|
B:GLU442
|
4.8
|
47.2
|
1.0
|
CA
|
B:ASP526
|
5.0
|
91.6
|
1.0
|
OD2
|
B:ASP204
|
5.0
|
51.9
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 8uya
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Magnesium Binding Sites List in 8uya
Magnesium binding site 8 out
of 8 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1004
b:45.2
occ:1.00
|
O2B
|
B:ATP1005
|
2.1
|
46.6
|
1.0
|
PB
|
B:ATP1005
|
3.6
|
46.6
|
1.0
|
O3B
|
B:ATP1005
|
4.0
|
46.6
|
1.0
|
OD2
|
B:ASP373
|
4.2
|
31.2
|
1.0
|
O1A
|
B:ATP1005
|
4.3
|
46.6
|
1.0
|
O2G
|
B:ATP1005
|
4.3
|
46.6
|
1.0
|
O3A
|
B:ATP1005
|
4.4
|
46.6
|
1.0
|
O1G
|
B:ATP1005
|
4.5
|
46.6
|
1.0
|
PG
|
B:ATP1005
|
4.5
|
46.6
|
1.0
|
O
|
B:HOH1105
|
4.6
|
20.3
|
1.0
|
O1B
|
B:ATP1005
|
4.6
|
46.6
|
1.0
|
CB
|
B:ASP373
|
4.6
|
31.2
|
1.0
|
O
|
B:THR375
|
4.8
|
25.2
|
1.0
|
PA
|
B:ATP1005
|
4.8
|
46.6
|
1.0
|
CG
|
B:ASP373
|
4.9
|
31.2
|
1.0
|
OD1
|
B:ASP641
|
4.9
|
24.1
|
1.0
|
|
Reference:
R.Zeinert,
F.Zhou,
P.H.Cavalcanti Franco,
J.Zoeller,
H.Lessen,
A.Iyer,
J.D.Langer,
A.J.Sodt,
G.Storz,
D.Matthies.
Magnesium Transporter Mgta Revealed As A Dimeric P-Type Atpase To Be Published.
Page generated: Tue Dec 10 20:48:22 2024
|