Magnesium in PDB 8uyb: Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys
(pdb code 8uyb). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys, PDB code: 8uyb:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 8uyb
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Magnesium Binding Sites List in 8uyb
Magnesium binding site 1 out
of 6 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1001
b:132.4
occ:1.00
|
OG
|
A:SER813
|
2.3
|
126.1
|
1.0
|
CA
|
A:GLY810
|
2.7
|
126.5
|
1.0
|
O
|
A:GLY810
|
2.8
|
126.5
|
1.0
|
ND2
|
A:ASN709
|
3.0
|
115.1
|
1.0
|
C
|
A:GLY810
|
3.1
|
126.5
|
1.0
|
CB
|
A:SER813
|
3.6
|
126.1
|
1.0
|
OD1
|
A:ASP780
|
3.8
|
136.4
|
1.0
|
N
|
A:GLY810
|
3.9
|
126.5
|
1.0
|
NE2
|
A:GLN733
|
4.0
|
122.3
|
1.0
|
CG
|
A:ASN709
|
4.1
|
115.1
|
1.0
|
OD2
|
A:ASP780
|
4.1
|
136.4
|
1.0
|
O
|
A:VAL809
|
4.2
|
128.9
|
1.0
|
OD1
|
A:ASN709
|
4.3
|
115.1
|
1.0
|
CG
|
A:ASP780
|
4.3
|
136.4
|
1.0
|
N
|
A:LEU811
|
4.3
|
124.3
|
1.0
|
NE1
|
A:TRP806
|
4.4
|
128.2
|
1.0
|
C
|
A:VAL809
|
4.5
|
128.9
|
1.0
|
N
|
A:GLN814
|
4.5
|
125.3
|
1.0
|
CG
|
A:GLN814
|
4.6
|
125.3
|
1.0
|
CA
|
A:SER813
|
4.7
|
126.1
|
1.0
|
N
|
A:SER813
|
4.9
|
126.1
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 8uyb
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Magnesium Binding Sites List in 8uyb
Magnesium binding site 2 out
of 6 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1002
b:110.4
occ:1.00
|
OD1
|
A:ASP191
|
2.1
|
102.3
|
1.0
|
OD2
|
A:ASP663
|
2.3
|
97.5
|
1.0
|
CG
|
A:ASP191
|
2.7
|
102.3
|
1.0
|
O
|
A:THR156
|
2.8
|
101.3
|
1.0
|
CB
|
A:ASP191
|
3.3
|
102.3
|
1.0
|
CG
|
A:ASP663
|
3.4
|
97.5
|
1.0
|
OD2
|
A:ASP191
|
3.4
|
102.3
|
1.0
|
OD1
|
A:ASP663
|
3.8
|
97.5
|
1.0
|
CA
|
A:ASP191
|
3.9
|
102.3
|
1.0
|
C
|
A:THR156
|
3.9
|
101.3
|
1.0
|
OG1
|
A:THR156
|
4.0
|
101.3
|
1.0
|
N
|
A:THR156
|
4.5
|
101.3
|
1.0
|
CB
|
A:ASP663
|
4.6
|
97.5
|
1.0
|
CA
|
A:THR156
|
4.7
|
101.3
|
1.0
|
C
|
A:ASP191
|
4.8
|
102.3
|
1.0
|
N
|
A:ALA157
|
4.9
|
109.0
|
1.0
|
N
|
A:MET192
|
4.9
|
97.6
|
1.0
|
N
|
A:ASP191
|
5.0
|
102.3
|
1.0
|
CB
|
A:THR156
|
5.0
|
101.3
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 8uyb
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Magnesium Binding Sites List in 8uyb
Magnesium binding site 3 out
of 6 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg1003
b:120.8
occ:1.00
|
OD1
|
A:ASP441
|
2.1
|
120.8
|
1.0
|
OD1
|
A:ASP204
|
2.3
|
116.0
|
1.0
|
CG
|
A:ASP441
|
3.1
|
120.8
|
1.0
|
CG
|
A:ASP204
|
3.4
|
116.0
|
1.0
|
OD2
|
A:ASP441
|
3.6
|
120.8
|
1.0
|
OD2
|
A:ASP204
|
4.2
|
116.0
|
1.0
|
CB
|
A:ASP204
|
4.4
|
116.0
|
1.0
|
CB
|
A:ASP441
|
4.4
|
120.8
|
1.0
|
CA
|
A:ASP204
|
4.5
|
116.0
|
1.0
|
OD2
|
A:ASP526
|
4.5
|
134.9
|
1.0
|
N
|
A:GLU442
|
4.5
|
113.5
|
1.0
|
CA
|
A:ASP441
|
4.6
|
120.8
|
1.0
|
CE1
|
A:PHE206
|
4.7
|
105.6
|
1.0
|
O
|
A:GLU442
|
4.7
|
113.5
|
1.0
|
OE2
|
A:GLU220
|
4.9
|
113.8
|
1.0
|
CZ
|
A:PHE206
|
5.0
|
105.6
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 8uyb
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Magnesium Binding Sites List in 8uyb
Magnesium binding site 4 out
of 6 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1001
b:131.6
occ:1.00
|
OG
|
B:SER813
|
2.5
|
125.8
|
1.0
|
ND2
|
B:ASN709
|
2.7
|
115.4
|
1.0
|
CA
|
B:GLY810
|
2.7
|
127.7
|
1.0
|
O
|
B:GLY810
|
3.0
|
127.7
|
1.0
|
C
|
B:GLY810
|
3.2
|
127.7
|
1.0
|
CG
|
B:ASN709
|
3.7
|
115.4
|
1.0
|
CB
|
B:SER813
|
3.8
|
125.8
|
1.0
|
OD1
|
B:ASP780
|
3.9
|
136.8
|
1.0
|
NE2
|
B:GLN733
|
3.9
|
121.3
|
1.0
|
OD1
|
B:ASN709
|
3.9
|
115.4
|
1.0
|
N
|
B:GLY810
|
3.9
|
127.7
|
1.0
|
OD2
|
B:ASP780
|
4.0
|
136.8
|
1.0
|
CG
|
B:ASP780
|
4.3
|
136.8
|
1.0
|
CG
|
B:GLN814
|
4.4
|
123.6
|
1.0
|
N
|
B:LEU811
|
4.5
|
124.2
|
1.0
|
O
|
B:VAL809
|
4.5
|
129.2
|
1.0
|
NE1
|
B:TRP806
|
4.5
|
128.4
|
1.0
|
N
|
B:GLN814
|
4.6
|
123.6
|
1.0
|
C
|
B:VAL809
|
4.6
|
129.2
|
1.0
|
CA
|
B:SER813
|
4.9
|
125.8
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 8uyb
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Magnesium Binding Sites List in 8uyb
Magnesium binding site 5 out
of 6 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1002
b:112.1
occ:1.00
|
OD1
|
B:ASP191
|
2.1
|
102.7
|
1.0
|
OD2
|
B:ASP663
|
2.3
|
100.3
|
1.0
|
CG
|
B:ASP191
|
2.7
|
102.7
|
1.0
|
O
|
B:THR156
|
2.7
|
103.3
|
1.0
|
CG
|
B:ASP663
|
3.4
|
100.3
|
1.0
|
CB
|
B:ASP191
|
3.4
|
102.7
|
1.0
|
OD2
|
B:ASP191
|
3.5
|
102.7
|
1.0
|
OD1
|
B:ASP663
|
3.8
|
100.3
|
1.0
|
C
|
B:THR156
|
3.9
|
103.3
|
1.0
|
CA
|
B:ASP191
|
3.9
|
102.7
|
1.0
|
OG1
|
B:THR156
|
4.0
|
103.3
|
1.0
|
N
|
B:THR156
|
4.4
|
103.3
|
1.0
|
CB
|
B:ASP663
|
4.6
|
100.3
|
1.0
|
CA
|
B:THR156
|
4.6
|
103.3
|
1.0
|
N
|
B:ALA157
|
4.9
|
110.6
|
1.0
|
C
|
B:ASP191
|
4.9
|
102.7
|
1.0
|
N
|
B:MET192
|
5.0
|
98.7
|
1.0
|
CB
|
B:THR156
|
5.0
|
103.3
|
1.0
|
CA
|
B:ALA157
|
5.0
|
110.6
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 8uyb
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Magnesium Binding Sites List in 8uyb
Magnesium binding site 6 out
of 6 in the Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Magnesium Transporter Mgta Dimer From E. Coli in 5 Mm MGCL2 and 5 Mm Atpys within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg1003
b:120.2
occ:1.00
|
OD1
|
B:ASP441
|
2.1
|
120.9
|
1.0
|
OD1
|
B:ASP204
|
2.3
|
114.9
|
1.0
|
CG
|
B:ASP441
|
3.1
|
120.9
|
1.0
|
CG
|
B:ASP204
|
3.4
|
114.9
|
1.0
|
OD2
|
B:ASP441
|
3.6
|
120.9
|
1.0
|
OD2
|
B:ASP204
|
4.2
|
114.9
|
1.0
|
CB
|
B:ASP204
|
4.4
|
114.9
|
1.0
|
CB
|
B:ASP441
|
4.4
|
120.9
|
1.0
|
OD2
|
B:ASP526
|
4.5
|
133.3
|
1.0
|
CA
|
B:ASP204
|
4.5
|
114.9
|
1.0
|
N
|
B:GLU442
|
4.5
|
113.3
|
1.0
|
CA
|
B:ASP441
|
4.6
|
120.9
|
1.0
|
O
|
B:GLU442
|
4.7
|
113.3
|
1.0
|
CE1
|
B:PHE206
|
4.7
|
104.3
|
1.0
|
OE2
|
B:GLU220
|
4.9
|
112.2
|
1.0
|
CZ
|
B:PHE206
|
5.0
|
104.3
|
1.0
|
|
Reference:
R.Zeinert,
F.Zhou,
P.H.Cavalcanti Franco,
J.Zoeller,
H.Lessen,
A.Iyer,
J.D.Langer,
A.J.Sodt,
G.Storz,
D.Matthies.
Magnesium Transporter Mgta Revealed As A Dimeric P-Type Atpase To Be Published.
Page generated: Tue Dec 10 20:48:16 2024
|