Magnesium in PDB 8uz1: Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)

Other elements in 8uz1:

The structure of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) also contains other interesting chemical elements:

Fluorine (F) 27 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) (pdb code 8uz1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx), PDB code: 8uz1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Magnesium binding site 1 out of 9 in 8uz1

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Magnesium binding site 1 out of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg402

b:25.1
occ:1.00
F2 J:BEF403 1.9 23.5 1.0
O2B J:ADP401 1.9 22.7 1.0
OE1 J:GLN137 2.0 45.6 1.0
HE22 J:GLN137 2.7 39.9 1.0
BE J:BEF403 2.9 23.5 1.0
CD J:GLN137 2.9 36.6 1.0
O3B J:ADP401 2.9 22.7 1.0
PB J:ADP401 3.0 22.7 1.0
NE2 J:GLN137 3.2 39.9 1.0
OD2 J:ASP154 3.3 42.3 1.0
HA3 J:GLY156 3.3 15.7 1.0
OD1 J:ASP154 3.4 40.5 1.0
O1B J:ADP401 3.7 22.7 1.0
HG23 J:VAL339 3.7 17.6 1.0
CG J:ASP154 3.8 35.7 1.0
F3 J:BEF403 3.9 23.5 1.0
F1 J:BEF403 3.9 23.5 1.0
HB3 J:GLN137 4.1 30.6 1.0
CA J:GLY156 4.2 15.7 1.0
HE21 J:GLN137 4.2 39.9 1.0
HA2 J:GLY156 4.2 15.7 1.0
O3A J:ADP401 4.2 22.7 1.0
CG J:GLN137 4.3 25.2 1.0
HE2 J:HIS161 4.3 29.1 1.0
H J:GLY156 4.5 14.5 1.0
N J:GLY156 4.5 14.5 1.0
HG12 J:VAL159 4.6 32.0 1.0
HG11 J:VAL339 4.6 16.2 1.0
CB J:GLN137 4.6 30.6 1.0
HG13 J:VAL159 4.7 32.0 1.0
HA3 J:GLY301 4.7 23.8 1.0
HA3 J:GLY13 4.7 20.7 1.0
HB2 J:GLN137 4.7 30.6 1.0
CG2 J:VAL339 4.8 17.6 1.0
O2A J:ADP401 4.9 22.7 1.0
HG3 J:GLN137 4.9 25.2 1.0
HG2 J:GLN137 4.9 25.2 1.0
HZ3 J:LYS18 4.9 12.0 1.0
H J:ASP157 4.9 18.2 1.0

Magnesium binding site 2 out of 9 in 8uz1

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Magnesium binding site 2 out of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg402

b:25.1
occ:1.00
F2 K:BEF403 1.8 23.5 1.0
O2B K:ADP401 1.9 22.7 1.0
OE1 K:GLN137 2.0 45.6 1.0
O3B K:ADP401 2.8 22.7 1.0
BE K:BEF403 2.8 23.5 1.0
PB K:ADP401 2.8 22.7 1.0
CD K:GLN137 3.1 36.6 1.0
O1B K:ADP401 3.4 22.7 1.0
HA3 K:GLY156 3.5 15.7 1.0
HE22 K:GLN137 3.6 39.9 1.0
NE2 K:GLN137 3.7 39.9 1.0
F3 K:BEF403 3.8 23.5 1.0
HG23 K:VAL339 3.8 17.6 1.0
OD2 K:ASP154 3.8 42.3 1.0
F1 K:BEF403 3.9 23.5 1.0
HA3 K:GLY13 4.0 20.7 1.0
HB3 K:GLN137 4.1 30.6 1.0
CG K:GLN137 4.2 25.2 1.0
O3A K:ADP401 4.2 22.7 1.0
HG3 K:GLN137 4.3 25.2 1.0
HA2 K:GLY156 4.4 15.7 1.0
CA K:GLY156 4.4 15.7 1.0
HZ3 K:LYS18 4.5 12.0 1.0
HE2 K:HIS161 4.6 29.1 1.0
HG11 K:VAL339 4.6 16.2 1.0
OD1 K:ASP154 4.6 40.5 1.0
CG K:ASP154 4.6 35.7 1.0
CB K:GLN137 4.7 30.6 1.0
HE21 K:GLN137 4.7 39.9 1.0
HG12 K:VAL159 4.7 32.0 1.0
OD2 K:ASP11 4.7 39.9 1.0
OD1 K:ASP11 4.8 42.8 1.0
H K:SER14 4.8 22.6 1.0
CG2 K:VAL339 4.9 17.6 1.0
H K:ASP157 4.9 18.2 1.0
N K:GLY156 4.9 14.5 1.0
H K:GLY156 4.9 14.5 1.0
O2A K:ADP401 4.9 22.7 1.0
HG13 K:VAL159 4.9 32.0 1.0
HB2 K:GLN137 5.0 30.6 1.0

Magnesium binding site 3 out of 9 in 8uz1

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Magnesium binding site 3 out of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg402

b:25.1
occ:1.00
F2 L:BEF403 1.8 23.5 1.0
O2B L:ADP401 1.9 22.7 1.0
OE1 L:GLN137 2.0 45.6 1.0
O3B L:ADP401 2.8 22.7 1.0
BE L:BEF403 2.8 23.5 1.0
PB L:ADP401 2.9 22.7 1.0
CD L:GLN137 3.1 36.6 1.0
O1B L:ADP401 3.4 22.7 1.0
HA3 L:GLY156 3.5 15.7 1.0
HE22 L:GLN137 3.6 39.9 1.0
NE2 L:GLN137 3.7 39.9 1.0
F3 L:BEF403 3.8 23.5 1.0
HA3 L:GLY13 3.9 20.7 1.0
F1 L:BEF403 3.9 23.5 1.0
HG22 L:VAL339 4.0 17.6 1.0
HB3 L:GLN137 4.1 30.6 1.0
OD2 L:ASP154 4.1 42.3 1.0
O3A L:ADP401 4.2 22.7 1.0
CG L:GLN137 4.2 25.2 1.0
HG3 L:GLN137 4.2 25.2 1.0
HZ3 L:LYS18 4.3 12.0 1.0
CA L:GLY156 4.4 15.7 1.0
HA2 L:GLY156 4.4 15.7 1.0
OD1 L:ASP11 4.6 42.8 1.0
HG11 L:VAL339 4.6 16.2 1.0
HE21 L:GLN137 4.7 39.9 1.0
HA2 L:GLY13 4.7 20.7 1.0
H L:SER14 4.7 22.6 1.0
HE2 L:HIS161 4.7 29.1 1.0
OD2 L:ASP11 4.7 39.9 1.0
CB L:GLN137 4.7 30.6 1.0
H L:ASP157 4.8 18.2 1.0
CA L:GLY13 4.8 20.7 1.0
H L:GLY156 4.9 14.5 1.0
O2A L:ADP401 4.9 22.7 1.0
N L:GLY156 4.9 14.5 1.0
CG2 L:VAL339 5.0 17.6 1.0

Magnesium binding site 4 out of 9 in 8uz1

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Magnesium binding site 4 out of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg402

b:25.1
occ:1.00
F2 M:BEF403 1.8 23.5 1.0
O2B M:ADP401 1.8 22.7 1.0
OE1 M:GLN137 1.9 45.6 1.0
HE22 M:GLN137 2.7 39.9 1.0
BE M:BEF403 2.8 23.5 1.0
O3B M:ADP401 2.8 22.7 1.0
PB M:ADP401 2.9 22.7 1.0
CD M:GLN137 2.9 36.6 1.0
NE2 M:GLN137 3.2 39.9 1.0
HA3 M:GLY156 3.3 15.7 1.0
O1B M:ADP401 3.6 22.7 1.0
F3 M:BEF403 3.7 23.5 1.0
HG22 M:VAL339 3.8 17.6 1.0
OD2 M:ASP154 3.8 42.3 1.0
F1 M:BEF403 4.0 23.5 1.0
HA3 M:GLY13 4.0 20.7 1.0
O3A M:ADP401 4.2 22.7 1.0
HA2 M:GLY156 4.2 15.7 1.0
CA M:GLY156 4.2 15.7 1.0
HE21 M:GLN137 4.2 39.9 1.0
CG M:GLN137 4.3 25.2 1.0
HB3 M:GLN137 4.4 30.6 1.0
HZ2 M:LYS18 4.4 12.0 1.0
HG2 M:GLN137 4.5 25.2 1.0
HG11 M:VAL339 4.5 16.2 1.0
OD1 M:ASP154 4.6 40.5 1.0
CG M:ASP154 4.6 35.7 1.0
HE2 M:HIS161 4.6 29.1 1.0
H M:GLY156 4.7 14.5 1.0
OD2 M:ASP11 4.7 39.9 1.0
N M:GLY156 4.7 14.5 1.0
H M:ASP157 4.7 18.2 1.0
O2A M:ADP401 4.8 22.7 1.0
CG2 M:VAL339 4.8 17.6 1.0
OD1 M:ASP11 4.8 42.8 1.0
H M:SER14 4.8 22.6 1.0
HG13 M:VAL159 4.9 32.0 1.0
CB M:GLN137 4.9 30.6 1.0

Magnesium binding site 5 out of 9 in 8uz1

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Magnesium binding site 5 out of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Mg402

b:25.1
occ:1.00
F2 N:BEF403 1.8 23.5 1.0
O2B N:ADP401 1.9 22.7 1.0
OE1 N:GLN137 2.0 45.6 1.0
O3B N:ADP401 2.8 22.7 1.0
BE N:BEF403 2.8 23.5 1.0
PB N:ADP401 2.8 22.7 1.0
CD N:GLN137 3.1 36.6 1.0
O1B N:ADP401 3.3 22.7 1.0
HA3 N:GLY156 3.5 15.7 1.0
HE22 N:GLN137 3.6 39.9 1.0
F3 N:BEF403 3.7 23.5 1.0
NE2 N:GLN137 3.7 39.9 1.0
HA3 N:GLY13 3.8 20.7 1.0
HG23 N:VAL339 3.9 17.6 1.0
F1 N:BEF403 4.0 23.5 1.0
OD2 N:ASP154 4.0 42.3 1.0
HB3 N:GLN137 4.0 30.6 1.0
HG3 N:GLN137 4.1 25.2 1.0
CG N:GLN137 4.2 25.2 1.0
O3A N:ADP401 4.2 22.7 1.0
HZ2 N:LYS18 4.2 12.0 1.0
CA N:GLY156 4.5 15.7 1.0
HA2 N:GLY156 4.5 15.7 1.0
HG11 N:VAL339 4.5 16.2 1.0
H N:SER14 4.6 22.6 1.0
OD2 N:ASP11 4.6 39.9 1.0
CB N:GLN137 4.7 30.6 1.0
HE21 N:GLN137 4.7 39.9 1.0
HE2 N:HIS161 4.7 29.1 1.0
OD1 N:ASP11 4.7 42.8 1.0
CA N:GLY13 4.7 20.7 1.0
HA2 N:GLY13 4.8 20.7 1.0
H N:ASP157 4.8 18.2 1.0
O2A N:ADP401 4.8 22.7 1.0
H N:GLY156 4.9 14.5 1.0
CG N:ASP154 4.9 35.7 1.0
CG2 N:VAL339 4.9 17.6 1.0
OD1 N:ASP154 5.0 40.5 1.0
HG13 N:VAL159 5.0 32.0 1.0

Magnesium binding site 6 out of 9 in 8uz1

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Magnesium binding site 6 out of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Mg402

b:25.1
occ:1.00
F2 O:BEF403 1.8 23.5 1.0
O2B O:ADP401 1.9 22.7 1.0
OE1 O:GLN137 2.0 45.6 1.0
BE O:BEF403 2.8 23.5 1.0
O3B O:ADP401 2.9 22.7 1.0
PB O:ADP401 2.9 22.7 1.0
CD O:GLN137 3.1 36.6 1.0
O1B O:ADP401 3.5 22.7 1.0
HA3 O:GLY156 3.5 15.7 1.0
HE22 O:GLN137 3.6 39.9 1.0
F3 O:BEF403 3.7 23.5 1.0
NE2 O:GLN137 3.8 39.9 1.0
HG23 O:VAL339 3.8 17.6 1.0
F1 O:BEF403 4.0 23.5 1.0
OD2 O:ASP154 4.0 42.3 1.0
HB3 O:GLN137 4.1 30.6 1.0
HA3 O:GLY13 4.2 20.7 1.0
CG O:GLN137 4.2 25.2 1.0
O3A O:ADP401 4.2 22.7 1.0
HG3 O:GLN137 4.2 25.2 1.0
HZ2 O:LYS18 4.4 12.0 1.0
CA O:GLY156 4.4 15.7 1.0
HA2 O:GLY156 4.4 15.7 1.0
HG11 O:VAL339 4.5 16.2 1.0
HE2 O:HIS161 4.6 29.1 1.0
HA2 O:GLY13 4.6 20.7 1.0
H O:SER14 4.7 22.6 1.0
CB O:GLN137 4.7 30.6 1.0
HE21 O:GLN137 4.7 39.9 1.0
H O:ASP157 4.8 18.2 1.0
CG2 O:VAL339 4.8 17.6 1.0
O2A O:ADP401 4.8 22.7 1.0
HG12 O:VAL159 4.9 32.0 1.0
CG O:ASP154 4.9 35.7 1.0
OD2 O:ASP11 4.9 39.9 1.0
OD1 O:ASP11 4.9 42.8 1.0
OD1 O:ASP154 4.9 40.5 1.0
H O:GLY156 4.9 14.5 1.0
N O:GLY156 4.9 14.5 1.0
CA O:GLY13 5.0 20.7 1.0
HB O:VAL339 5.0 17.4 1.0

Magnesium binding site 7 out of 9 in 8uz1

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Magnesium binding site 7 out of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Mg402

b:25.1
occ:1.00
F2 P:BEF403 1.8 23.5 1.0
O2B P:ADP401 1.8 22.7 1.0
OE1 P:GLN137 1.9 45.6 1.0
HE22 P:GLN137 2.7 39.9 1.0
BE P:BEF403 2.9 23.5 1.0
O3B P:ADP401 2.9 22.7 1.0
PB P:ADP401 2.9 22.7 1.0
CD P:GLN137 2.9 36.6 1.0
NE2 P:GLN137 3.2 39.9 1.0
HA3 P:GLY156 3.4 15.7 1.0
O1B P:ADP401 3.5 22.7 1.0
HG23 P:VAL339 3.7 17.6 1.0
F3 P:BEF403 3.7 23.5 1.0
F1 P:BEF403 4.0 23.5 1.0
OD2 P:ASP154 4.0 42.3 1.0
O3A P:ADP401 4.2 22.7 1.0
HE21 P:GLN137 4.2 39.9 1.0
HA2 P:GLY156 4.2 15.7 1.0
HZ2 P:LYS18 4.2 12.0 1.0
CA P:GLY156 4.3 15.7 1.0
CG P:GLN137 4.3 25.2 1.0
HA3 P:GLY13 4.4 20.7 1.0
HB3 P:GLN137 4.4 30.6 1.0
HG2 P:GLN137 4.5 25.2 1.0
HA2 P:GLY13 4.5 20.7 1.0
HG11 P:VAL339 4.6 16.2 1.0
H P:SER14 4.7 22.6 1.0
CG2 P:VAL339 4.7 17.6 1.0
H P:ASP157 4.7 18.2 1.0
OD2 P:ASP11 4.7 39.9 1.0
O2A P:ADP401 4.8 22.7 1.0
OD1 P:ASP154 4.8 40.5 1.0
HG21 P:VAL339 4.8 17.6 1.0
N P:GLY156 4.8 14.5 1.0
HE2 P:HIS161 4.8 29.1 1.0
CG P:ASP154 4.8 35.7 1.0
H P:GLY156 4.9 14.5 1.0
OD1 P:ASP11 4.9 42.8 1.0
HG13 P:VAL159 4.9 32.0 1.0
HB P:VAL339 5.0 17.4 1.0
CB P:GLN137 5.0 30.6 1.0
CA P:GLY13 5.0 20.7 1.0

Magnesium binding site 8 out of 9 in 8uz1

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Magnesium binding site 8 out of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Mg402

b:25.1
occ:1.00
F2 Q:BEF403 1.8 23.5 1.0
O2B Q:ADP401 1.8 22.7 1.0
OE1 Q:GLN137 1.9 45.6 1.0
HE22 Q:GLN137 2.7 39.9 1.0
O3B Q:ADP401 2.7 22.7 1.0
BE Q:BEF403 2.8 23.5 1.0
PB Q:ADP401 2.8 22.7 1.0
CD Q:GLN137 2.9 36.6 1.0
NE2 Q:GLN137 3.2 39.9 1.0
HA3 Q:GLY156 3.3 15.7 1.0
O1B Q:ADP401 3.4 22.7 1.0
OD2 Q:ASP154 3.7 42.3 1.0
HG23 Q:VAL339 3.7 17.6 1.0
F3 Q:BEF403 3.7 23.5 1.0
F1 Q:BEF403 3.9 23.5 1.0
HA2 Q:GLY156 4.0 15.7 1.0
CA Q:GLY156 4.1 15.7 1.0
O3A Q:ADP401 4.2 22.7 1.0
HE21 Q:GLN137 4.2 39.9 1.0
CG Q:GLN137 4.3 25.2 1.0
HB3 Q:GLN137 4.3 30.6 1.0
HA3 Q:GLY13 4.5 20.7 1.0
HE2 Q:HIS161 4.5 29.1 1.0
HZ3 Q:LYS18 4.5 12.0 1.0
HG2 Q:GLN137 4.5 25.2 1.0
CG Q:ASP154 4.6 35.7 1.0
H Q:ASP157 4.6 18.2 1.0
N Q:GLY156 4.6 14.5 1.0
OD1 Q:ASP154 4.6 40.5 1.0
H Q:GLY156 4.7 14.5 1.0
HG11 Q:VAL339 4.7 16.2 1.0
HG13 Q:VAL159 4.8 32.0 1.0
O2A Q:ADP401 4.8 22.7 1.0
CG2 Q:VAL339 4.8 17.6 1.0
H Q:SER14 4.8 22.6 1.0
CB Q:GLN137 4.8 30.6 1.0
OD2 Q:ASP11 4.9 39.9 1.0
HG12 Q:VAL159 4.9 32.0 1.0
HA2 Q:GLY13 5.0 20.7 1.0

Magnesium binding site 9 out of 9 in 8uz1

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Magnesium binding site 9 out of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Mg402

b:25.1
occ:1.00
F2 R:BEF403 1.8 23.5 1.0
O2B R:ADP401 1.9 22.7 1.0
OE1 R:GLN137 2.0 45.6 1.0
O3B R:ADP401 2.6 22.7 1.0
BE R:BEF403 2.7 23.5 1.0
PB R:ADP401 2.8 22.7 1.0
CD R:GLN137 3.0 36.6 1.0
O1B R:ADP401 3.3 22.7 1.0
HA3 R:GLY156 3.6 15.7 1.0
HE22 R:GLN137 3.6 39.9 1.0
F3 R:BEF403 3.6 23.5 1.0
NE2 R:GLN137 3.7 39.9 1.0
F1 R:BEF403 3.9 23.5 1.0
OD2 R:ASP154 4.0 42.3 1.0
HB3 R:GLN137 4.0 30.6 1.0
HG22 R:VAL339 4.1 17.6 1.0
HG3 R:GLN137 4.1 25.2 1.0
CG R:GLN137 4.1 25.2 1.0
O3A R:ADP401 4.1 22.7 1.0
HA3 R:GLY13 4.3 20.7 1.0
HZ2 R:LYS18 4.4 12.0 1.0
HA2 R:GLY156 4.4 15.7 1.0
CA R:GLY156 4.5 15.7 1.0
HA2 R:GLY13 4.5 20.7 1.0
HE2 R:HIS161 4.6 29.1 1.0
H R:SER14 4.6 22.6 1.0
HG11 R:VAL339 4.6 16.2 1.0
HE21 R:GLN137 4.6 39.9 1.0
CB R:GLN137 4.6 30.6 1.0
OD2 R:ASP11 4.7 39.9 1.0
OD1 R:ASP11 4.7 42.8 1.0
H R:ASP157 4.8 18.2 1.0
HG13 R:VAL159 4.9 32.0 1.0
CG R:ASP154 4.9 35.7 1.0
O2A R:ADP401 4.9 22.7 1.0
CA R:GLY13 5.0 20.7 1.0
OD1 R:ASP154 5.0 40.5 1.0

Reference:

S.S.Chavali, S.Z.Chou, W.Cao, T.D.Pollard, E.M.De La Cruz, C.V.Sindelar. High Resolution Cryo-Em Structures Reveal How Phosphate Release From ARP3 Weakens Actin Filament Branches Formed By the ARP2/3 Complex To Be Published.
Page generated: Fri Oct 4 21:53:51 2024

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