Magnesium in PDB 8uz1: Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
Other elements in 8uz1:
The structure of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
(pdb code 8uz1). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the
Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx), PDB code: 8uz1:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Magnesium binding site 1 out
of 9 in 8uz1
Go back to
Magnesium Binding Sites List in 8uz1
Magnesium binding site 1 out
of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg402
b:25.1
occ:1.00
|
F2
|
J:BEF403
|
1.9
|
23.5
|
1.0
|
|
O2B
|
J:ADP401
|
1.9
|
22.7
|
1.0
|
|
OE1
|
J:GLN137
|
2.0
|
45.6
|
1.0
|
|
HE22
|
J:GLN137
|
2.7
|
39.9
|
1.0
|
|
BE
|
J:BEF403
|
2.9
|
23.5
|
1.0
|
|
CD
|
J:GLN137
|
2.9
|
36.6
|
1.0
|
|
O3B
|
J:ADP401
|
2.9
|
22.7
|
1.0
|
|
PB
|
J:ADP401
|
3.0
|
22.7
|
1.0
|
|
NE2
|
J:GLN137
|
3.2
|
39.9
|
1.0
|
|
OD2
|
J:ASP154
|
3.3
|
42.3
|
1.0
|
|
HA3
|
J:GLY156
|
3.3
|
15.7
|
1.0
|
|
OD1
|
J:ASP154
|
3.4
|
40.5
|
1.0
|
|
O1B
|
J:ADP401
|
3.7
|
22.7
|
1.0
|
|
HG23
|
J:VAL339
|
3.7
|
17.6
|
1.0
|
|
CG
|
J:ASP154
|
3.8
|
35.7
|
1.0
|
|
F3
|
J:BEF403
|
3.9
|
23.5
|
1.0
|
|
F1
|
J:BEF403
|
3.9
|
23.5
|
1.0
|
|
HB3
|
J:GLN137
|
4.1
|
30.6
|
1.0
|
|
CA
|
J:GLY156
|
4.2
|
15.7
|
1.0
|
|
HE21
|
J:GLN137
|
4.2
|
39.9
|
1.0
|
|
HA2
|
J:GLY156
|
4.2
|
15.7
|
1.0
|
|
O3A
|
J:ADP401
|
4.2
|
22.7
|
1.0
|
|
CG
|
J:GLN137
|
4.3
|
25.2
|
1.0
|
|
HE2
|
J:HIS161
|
4.3
|
29.1
|
1.0
|
|
H
|
J:GLY156
|
4.5
|
14.5
|
1.0
|
|
N
|
J:GLY156
|
4.5
|
14.5
|
1.0
|
|
HG12
|
J:VAL159
|
4.6
|
32.0
|
1.0
|
|
HG11
|
J:VAL339
|
4.6
|
16.2
|
1.0
|
|
CB
|
J:GLN137
|
4.6
|
30.6
|
1.0
|
|
HG13
|
J:VAL159
|
4.7
|
32.0
|
1.0
|
|
HA3
|
J:GLY301
|
4.7
|
23.8
|
1.0
|
|
HA3
|
J:GLY13
|
4.7
|
20.7
|
1.0
|
|
HB2
|
J:GLN137
|
4.7
|
30.6
|
1.0
|
|
CG2
|
J:VAL339
|
4.8
|
17.6
|
1.0
|
|
O2A
|
J:ADP401
|
4.9
|
22.7
|
1.0
|
|
HG3
|
J:GLN137
|
4.9
|
25.2
|
1.0
|
|
HG2
|
J:GLN137
|
4.9
|
25.2
|
1.0
|
|
HZ3
|
J:LYS18
|
4.9
|
12.0
|
1.0
|
|
H
|
J:ASP157
|
4.9
|
18.2
|
1.0
|
|
Magnesium binding site 2 out
of 9 in 8uz1
Go back to
Magnesium Binding Sites List in 8uz1
Magnesium binding site 2 out
of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Mg402
b:25.1
occ:1.00
|
F2
|
K:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
K:ADP401
|
1.9
|
22.7
|
1.0
|
|
OE1
|
K:GLN137
|
2.0
|
45.6
|
1.0
|
|
O3B
|
K:ADP401
|
2.8
|
22.7
|
1.0
|
|
BE
|
K:BEF403
|
2.8
|
23.5
|
1.0
|
|
PB
|
K:ADP401
|
2.8
|
22.7
|
1.0
|
|
CD
|
K:GLN137
|
3.1
|
36.6
|
1.0
|
|
O1B
|
K:ADP401
|
3.4
|
22.7
|
1.0
|
|
HA3
|
K:GLY156
|
3.5
|
15.7
|
1.0
|
|
HE22
|
K:GLN137
|
3.6
|
39.9
|
1.0
|
|
NE2
|
K:GLN137
|
3.7
|
39.9
|
1.0
|
|
F3
|
K:BEF403
|
3.8
|
23.5
|
1.0
|
|
HG23
|
K:VAL339
|
3.8
|
17.6
|
1.0
|
|
OD2
|
K:ASP154
|
3.8
|
42.3
|
1.0
|
|
F1
|
K:BEF403
|
3.9
|
23.5
|
1.0
|
|
HA3
|
K:GLY13
|
4.0
|
20.7
|
1.0
|
|
HB3
|
K:GLN137
|
4.1
|
30.6
|
1.0
|
|
CG
|
K:GLN137
|
4.2
|
25.2
|
1.0
|
|
O3A
|
K:ADP401
|
4.2
|
22.7
|
1.0
|
|
HG3
|
K:GLN137
|
4.3
|
25.2
|
1.0
|
|
HA2
|
K:GLY156
|
4.4
|
15.7
|
1.0
|
|
CA
|
K:GLY156
|
4.4
|
15.7
|
1.0
|
|
HZ3
|
K:LYS18
|
4.5
|
12.0
|
1.0
|
|
HE2
|
K:HIS161
|
4.6
|
29.1
|
1.0
|
|
HG11
|
K:VAL339
|
4.6
|
16.2
|
1.0
|
|
OD1
|
K:ASP154
|
4.6
|
40.5
|
1.0
|
|
CG
|
K:ASP154
|
4.6
|
35.7
|
1.0
|
|
CB
|
K:GLN137
|
4.7
|
30.6
|
1.0
|
|
HE21
|
K:GLN137
|
4.7
|
39.9
|
1.0
|
|
HG12
|
K:VAL159
|
4.7
|
32.0
|
1.0
|
|
OD2
|
K:ASP11
|
4.7
|
39.9
|
1.0
|
|
OD1
|
K:ASP11
|
4.8
|
42.8
|
1.0
|
|
H
|
K:SER14
|
4.8
|
22.6
|
1.0
|
|
CG2
|
K:VAL339
|
4.9
|
17.6
|
1.0
|
|
H
|
K:ASP157
|
4.9
|
18.2
|
1.0
|
|
N
|
K:GLY156
|
4.9
|
14.5
|
1.0
|
|
H
|
K:GLY156
|
4.9
|
14.5
|
1.0
|
|
O2A
|
K:ADP401
|
4.9
|
22.7
|
1.0
|
|
HG13
|
K:VAL159
|
4.9
|
32.0
|
1.0
|
|
HB2
|
K:GLN137
|
5.0
|
30.6
|
1.0
|
|
Magnesium binding site 3 out
of 9 in 8uz1
Go back to
Magnesium Binding Sites List in 8uz1
Magnesium binding site 3 out
of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg402
b:25.1
occ:1.00
|
F2
|
L:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
L:ADP401
|
1.9
|
22.7
|
1.0
|
|
OE1
|
L:GLN137
|
2.0
|
45.6
|
1.0
|
|
O3B
|
L:ADP401
|
2.8
|
22.7
|
1.0
|
|
BE
|
L:BEF403
|
2.8
|
23.5
|
1.0
|
|
PB
|
L:ADP401
|
2.9
|
22.7
|
1.0
|
|
CD
|
L:GLN137
|
3.1
|
36.6
|
1.0
|
|
O1B
|
L:ADP401
|
3.4
|
22.7
|
1.0
|
|
HA3
|
L:GLY156
|
3.5
|
15.7
|
1.0
|
|
HE22
|
L:GLN137
|
3.6
|
39.9
|
1.0
|
|
NE2
|
L:GLN137
|
3.7
|
39.9
|
1.0
|
|
F3
|
L:BEF403
|
3.8
|
23.5
|
1.0
|
|
HA3
|
L:GLY13
|
3.9
|
20.7
|
1.0
|
|
F1
|
L:BEF403
|
3.9
|
23.5
|
1.0
|
|
HG22
|
L:VAL339
|
4.0
|
17.6
|
1.0
|
|
HB3
|
L:GLN137
|
4.1
|
30.6
|
1.0
|
|
OD2
|
L:ASP154
|
4.1
|
42.3
|
1.0
|
|
O3A
|
L:ADP401
|
4.2
|
22.7
|
1.0
|
|
CG
|
L:GLN137
|
4.2
|
25.2
|
1.0
|
|
HG3
|
L:GLN137
|
4.2
|
25.2
|
1.0
|
|
HZ3
|
L:LYS18
|
4.3
|
12.0
|
1.0
|
|
CA
|
L:GLY156
|
4.4
|
15.7
|
1.0
|
|
HA2
|
L:GLY156
|
4.4
|
15.7
|
1.0
|
|
OD1
|
L:ASP11
|
4.6
|
42.8
|
1.0
|
|
HG11
|
L:VAL339
|
4.6
|
16.2
|
1.0
|
|
HE21
|
L:GLN137
|
4.7
|
39.9
|
1.0
|
|
HA2
|
L:GLY13
|
4.7
|
20.7
|
1.0
|
|
H
|
L:SER14
|
4.7
|
22.6
|
1.0
|
|
HE2
|
L:HIS161
|
4.7
|
29.1
|
1.0
|
|
OD2
|
L:ASP11
|
4.7
|
39.9
|
1.0
|
|
CB
|
L:GLN137
|
4.7
|
30.6
|
1.0
|
|
H
|
L:ASP157
|
4.8
|
18.2
|
1.0
|
|
CA
|
L:GLY13
|
4.8
|
20.7
|
1.0
|
|
H
|
L:GLY156
|
4.9
|
14.5
|
1.0
|
|
O2A
|
L:ADP401
|
4.9
|
22.7
|
1.0
|
|
N
|
L:GLY156
|
4.9
|
14.5
|
1.0
|
|
CG2
|
L:VAL339
|
5.0
|
17.6
|
1.0
|
|
Magnesium binding site 4 out
of 9 in 8uz1
Go back to
Magnesium Binding Sites List in 8uz1
Magnesium binding site 4 out
of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg402
b:25.1
occ:1.00
|
F2
|
M:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
M:ADP401
|
1.8
|
22.7
|
1.0
|
|
OE1
|
M:GLN137
|
1.9
|
45.6
|
1.0
|
|
HE22
|
M:GLN137
|
2.7
|
39.9
|
1.0
|
|
BE
|
M:BEF403
|
2.8
|
23.5
|
1.0
|
|
O3B
|
M:ADP401
|
2.8
|
22.7
|
1.0
|
|
PB
|
M:ADP401
|
2.9
|
22.7
|
1.0
|
|
CD
|
M:GLN137
|
2.9
|
36.6
|
1.0
|
|
NE2
|
M:GLN137
|
3.2
|
39.9
|
1.0
|
|
HA3
|
M:GLY156
|
3.3
|
15.7
|
1.0
|
|
O1B
|
M:ADP401
|
3.6
|
22.7
|
1.0
|
|
F3
|
M:BEF403
|
3.7
|
23.5
|
1.0
|
|
HG22
|
M:VAL339
|
3.8
|
17.6
|
1.0
|
|
OD2
|
M:ASP154
|
3.8
|
42.3
|
1.0
|
|
F1
|
M:BEF403
|
4.0
|
23.5
|
1.0
|
|
HA3
|
M:GLY13
|
4.0
|
20.7
|
1.0
|
|
O3A
|
M:ADP401
|
4.2
|
22.7
|
1.0
|
|
HA2
|
M:GLY156
|
4.2
|
15.7
|
1.0
|
|
CA
|
M:GLY156
|
4.2
|
15.7
|
1.0
|
|
HE21
|
M:GLN137
|
4.2
|
39.9
|
1.0
|
|
CG
|
M:GLN137
|
4.3
|
25.2
|
1.0
|
|
HB3
|
M:GLN137
|
4.4
|
30.6
|
1.0
|
|
HZ2
|
M:LYS18
|
4.4
|
12.0
|
1.0
|
|
HG2
|
M:GLN137
|
4.5
|
25.2
|
1.0
|
|
HG11
|
M:VAL339
|
4.5
|
16.2
|
1.0
|
|
OD1
|
M:ASP154
|
4.6
|
40.5
|
1.0
|
|
CG
|
M:ASP154
|
4.6
|
35.7
|
1.0
|
|
HE2
|
M:HIS161
|
4.6
|
29.1
|
1.0
|
|
H
|
M:GLY156
|
4.7
|
14.5
|
1.0
|
|
OD2
|
M:ASP11
|
4.7
|
39.9
|
1.0
|
|
N
|
M:GLY156
|
4.7
|
14.5
|
1.0
|
|
H
|
M:ASP157
|
4.7
|
18.2
|
1.0
|
|
O2A
|
M:ADP401
|
4.8
|
22.7
|
1.0
|
|
CG2
|
M:VAL339
|
4.8
|
17.6
|
1.0
|
|
OD1
|
M:ASP11
|
4.8
|
42.8
|
1.0
|
|
H
|
M:SER14
|
4.8
|
22.6
|
1.0
|
|
HG13
|
M:VAL159
|
4.9
|
32.0
|
1.0
|
|
CB
|
M:GLN137
|
4.9
|
30.6
|
1.0
|
|
Magnesium binding site 5 out
of 9 in 8uz1
Go back to
Magnesium Binding Sites List in 8uz1
Magnesium binding site 5 out
of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Mg402
b:25.1
occ:1.00
|
F2
|
N:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
N:ADP401
|
1.9
|
22.7
|
1.0
|
|
OE1
|
N:GLN137
|
2.0
|
45.6
|
1.0
|
|
O3B
|
N:ADP401
|
2.8
|
22.7
|
1.0
|
|
BE
|
N:BEF403
|
2.8
|
23.5
|
1.0
|
|
PB
|
N:ADP401
|
2.8
|
22.7
|
1.0
|
|
CD
|
N:GLN137
|
3.1
|
36.6
|
1.0
|
|
O1B
|
N:ADP401
|
3.3
|
22.7
|
1.0
|
|
HA3
|
N:GLY156
|
3.5
|
15.7
|
1.0
|
|
HE22
|
N:GLN137
|
3.6
|
39.9
|
1.0
|
|
F3
|
N:BEF403
|
3.7
|
23.5
|
1.0
|
|
NE2
|
N:GLN137
|
3.7
|
39.9
|
1.0
|
|
HA3
|
N:GLY13
|
3.8
|
20.7
|
1.0
|
|
HG23
|
N:VAL339
|
3.9
|
17.6
|
1.0
|
|
F1
|
N:BEF403
|
4.0
|
23.5
|
1.0
|
|
OD2
|
N:ASP154
|
4.0
|
42.3
|
1.0
|
|
HB3
|
N:GLN137
|
4.0
|
30.6
|
1.0
|
|
HG3
|
N:GLN137
|
4.1
|
25.2
|
1.0
|
|
CG
|
N:GLN137
|
4.2
|
25.2
|
1.0
|
|
O3A
|
N:ADP401
|
4.2
|
22.7
|
1.0
|
|
HZ2
|
N:LYS18
|
4.2
|
12.0
|
1.0
|
|
CA
|
N:GLY156
|
4.5
|
15.7
|
1.0
|
|
HA2
|
N:GLY156
|
4.5
|
15.7
|
1.0
|
|
HG11
|
N:VAL339
|
4.5
|
16.2
|
1.0
|
|
H
|
N:SER14
|
4.6
|
22.6
|
1.0
|
|
OD2
|
N:ASP11
|
4.6
|
39.9
|
1.0
|
|
CB
|
N:GLN137
|
4.7
|
30.6
|
1.0
|
|
HE21
|
N:GLN137
|
4.7
|
39.9
|
1.0
|
|
HE2
|
N:HIS161
|
4.7
|
29.1
|
1.0
|
|
OD1
|
N:ASP11
|
4.7
|
42.8
|
1.0
|
|
CA
|
N:GLY13
|
4.7
|
20.7
|
1.0
|
|
HA2
|
N:GLY13
|
4.8
|
20.7
|
1.0
|
|
H
|
N:ASP157
|
4.8
|
18.2
|
1.0
|
|
O2A
|
N:ADP401
|
4.8
|
22.7
|
1.0
|
|
H
|
N:GLY156
|
4.9
|
14.5
|
1.0
|
|
CG
|
N:ASP154
|
4.9
|
35.7
|
1.0
|
|
CG2
|
N:VAL339
|
4.9
|
17.6
|
1.0
|
|
OD1
|
N:ASP154
|
5.0
|
40.5
|
1.0
|
|
HG13
|
N:VAL159
|
5.0
|
32.0
|
1.0
|
|
Magnesium binding site 6 out
of 9 in 8uz1
Go back to
Magnesium Binding Sites List in 8uz1
Magnesium binding site 6 out
of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Mg402
b:25.1
occ:1.00
|
F2
|
O:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
O:ADP401
|
1.9
|
22.7
|
1.0
|
|
OE1
|
O:GLN137
|
2.0
|
45.6
|
1.0
|
|
BE
|
O:BEF403
|
2.8
|
23.5
|
1.0
|
|
O3B
|
O:ADP401
|
2.9
|
22.7
|
1.0
|
|
PB
|
O:ADP401
|
2.9
|
22.7
|
1.0
|
|
CD
|
O:GLN137
|
3.1
|
36.6
|
1.0
|
|
O1B
|
O:ADP401
|
3.5
|
22.7
|
1.0
|
|
HA3
|
O:GLY156
|
3.5
|
15.7
|
1.0
|
|
HE22
|
O:GLN137
|
3.6
|
39.9
|
1.0
|
|
F3
|
O:BEF403
|
3.7
|
23.5
|
1.0
|
|
NE2
|
O:GLN137
|
3.8
|
39.9
|
1.0
|
|
HG23
|
O:VAL339
|
3.8
|
17.6
|
1.0
|
|
F1
|
O:BEF403
|
4.0
|
23.5
|
1.0
|
|
OD2
|
O:ASP154
|
4.0
|
42.3
|
1.0
|
|
HB3
|
O:GLN137
|
4.1
|
30.6
|
1.0
|
|
HA3
|
O:GLY13
|
4.2
|
20.7
|
1.0
|
|
CG
|
O:GLN137
|
4.2
|
25.2
|
1.0
|
|
O3A
|
O:ADP401
|
4.2
|
22.7
|
1.0
|
|
HG3
|
O:GLN137
|
4.2
|
25.2
|
1.0
|
|
HZ2
|
O:LYS18
|
4.4
|
12.0
|
1.0
|
|
CA
|
O:GLY156
|
4.4
|
15.7
|
1.0
|
|
HA2
|
O:GLY156
|
4.4
|
15.7
|
1.0
|
|
HG11
|
O:VAL339
|
4.5
|
16.2
|
1.0
|
|
HE2
|
O:HIS161
|
4.6
|
29.1
|
1.0
|
|
HA2
|
O:GLY13
|
4.6
|
20.7
|
1.0
|
|
H
|
O:SER14
|
4.7
|
22.6
|
1.0
|
|
CB
|
O:GLN137
|
4.7
|
30.6
|
1.0
|
|
HE21
|
O:GLN137
|
4.7
|
39.9
|
1.0
|
|
H
|
O:ASP157
|
4.8
|
18.2
|
1.0
|
|
CG2
|
O:VAL339
|
4.8
|
17.6
|
1.0
|
|
O2A
|
O:ADP401
|
4.8
|
22.7
|
1.0
|
|
HG12
|
O:VAL159
|
4.9
|
32.0
|
1.0
|
|
CG
|
O:ASP154
|
4.9
|
35.7
|
1.0
|
|
OD2
|
O:ASP11
|
4.9
|
39.9
|
1.0
|
|
OD1
|
O:ASP11
|
4.9
|
42.8
|
1.0
|
|
OD1
|
O:ASP154
|
4.9
|
40.5
|
1.0
|
|
H
|
O:GLY156
|
4.9
|
14.5
|
1.0
|
|
N
|
O:GLY156
|
4.9
|
14.5
|
1.0
|
|
CA
|
O:GLY13
|
5.0
|
20.7
|
1.0
|
|
HB
|
O:VAL339
|
5.0
|
17.4
|
1.0
|
|
Magnesium binding site 7 out
of 9 in 8uz1
Go back to
Magnesium Binding Sites List in 8uz1
Magnesium binding site 7 out
of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Mg402
b:25.1
occ:1.00
|
F2
|
P:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
P:ADP401
|
1.8
|
22.7
|
1.0
|
|
OE1
|
P:GLN137
|
1.9
|
45.6
|
1.0
|
|
HE22
|
P:GLN137
|
2.7
|
39.9
|
1.0
|
|
BE
|
P:BEF403
|
2.9
|
23.5
|
1.0
|
|
O3B
|
P:ADP401
|
2.9
|
22.7
|
1.0
|
|
PB
|
P:ADP401
|
2.9
|
22.7
|
1.0
|
|
CD
|
P:GLN137
|
2.9
|
36.6
|
1.0
|
|
NE2
|
P:GLN137
|
3.2
|
39.9
|
1.0
|
|
HA3
|
P:GLY156
|
3.4
|
15.7
|
1.0
|
|
O1B
|
P:ADP401
|
3.5
|
22.7
|
1.0
|
|
HG23
|
P:VAL339
|
3.7
|
17.6
|
1.0
|
|
F3
|
P:BEF403
|
3.7
|
23.5
|
1.0
|
|
F1
|
P:BEF403
|
4.0
|
23.5
|
1.0
|
|
OD2
|
P:ASP154
|
4.0
|
42.3
|
1.0
|
|
O3A
|
P:ADP401
|
4.2
|
22.7
|
1.0
|
|
HE21
|
P:GLN137
|
4.2
|
39.9
|
1.0
|
|
HA2
|
P:GLY156
|
4.2
|
15.7
|
1.0
|
|
HZ2
|
P:LYS18
|
4.2
|
12.0
|
1.0
|
|
CA
|
P:GLY156
|
4.3
|
15.7
|
1.0
|
|
CG
|
P:GLN137
|
4.3
|
25.2
|
1.0
|
|
HA3
|
P:GLY13
|
4.4
|
20.7
|
1.0
|
|
HB3
|
P:GLN137
|
4.4
|
30.6
|
1.0
|
|
HG2
|
P:GLN137
|
4.5
|
25.2
|
1.0
|
|
HA2
|
P:GLY13
|
4.5
|
20.7
|
1.0
|
|
HG11
|
P:VAL339
|
4.6
|
16.2
|
1.0
|
|
H
|
P:SER14
|
4.7
|
22.6
|
1.0
|
|
CG2
|
P:VAL339
|
4.7
|
17.6
|
1.0
|
|
H
|
P:ASP157
|
4.7
|
18.2
|
1.0
|
|
OD2
|
P:ASP11
|
4.7
|
39.9
|
1.0
|
|
O2A
|
P:ADP401
|
4.8
|
22.7
|
1.0
|
|
OD1
|
P:ASP154
|
4.8
|
40.5
|
1.0
|
|
HG21
|
P:VAL339
|
4.8
|
17.6
|
1.0
|
|
N
|
P:GLY156
|
4.8
|
14.5
|
1.0
|
|
HE2
|
P:HIS161
|
4.8
|
29.1
|
1.0
|
|
CG
|
P:ASP154
|
4.8
|
35.7
|
1.0
|
|
H
|
P:GLY156
|
4.9
|
14.5
|
1.0
|
|
OD1
|
P:ASP11
|
4.9
|
42.8
|
1.0
|
|
HG13
|
P:VAL159
|
4.9
|
32.0
|
1.0
|
|
HB
|
P:VAL339
|
5.0
|
17.4
|
1.0
|
|
CB
|
P:GLN137
|
5.0
|
30.6
|
1.0
|
|
CA
|
P:GLY13
|
5.0
|
20.7
|
1.0
|
|
Magnesium binding site 8 out
of 9 in 8uz1
Go back to
Magnesium Binding Sites List in 8uz1
Magnesium binding site 8 out
of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Mg402
b:25.1
occ:1.00
|
F2
|
Q:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
Q:ADP401
|
1.8
|
22.7
|
1.0
|
|
OE1
|
Q:GLN137
|
1.9
|
45.6
|
1.0
|
|
HE22
|
Q:GLN137
|
2.7
|
39.9
|
1.0
|
|
O3B
|
Q:ADP401
|
2.7
|
22.7
|
1.0
|
|
BE
|
Q:BEF403
|
2.8
|
23.5
|
1.0
|
|
PB
|
Q:ADP401
|
2.8
|
22.7
|
1.0
|
|
CD
|
Q:GLN137
|
2.9
|
36.6
|
1.0
|
|
NE2
|
Q:GLN137
|
3.2
|
39.9
|
1.0
|
|
HA3
|
Q:GLY156
|
3.3
|
15.7
|
1.0
|
|
O1B
|
Q:ADP401
|
3.4
|
22.7
|
1.0
|
|
OD2
|
Q:ASP154
|
3.7
|
42.3
|
1.0
|
|
HG23
|
Q:VAL339
|
3.7
|
17.6
|
1.0
|
|
F3
|
Q:BEF403
|
3.7
|
23.5
|
1.0
|
|
F1
|
Q:BEF403
|
3.9
|
23.5
|
1.0
|
|
HA2
|
Q:GLY156
|
4.0
|
15.7
|
1.0
|
|
CA
|
Q:GLY156
|
4.1
|
15.7
|
1.0
|
|
O3A
|
Q:ADP401
|
4.2
|
22.7
|
1.0
|
|
HE21
|
Q:GLN137
|
4.2
|
39.9
|
1.0
|
|
CG
|
Q:GLN137
|
4.3
|
25.2
|
1.0
|
|
HB3
|
Q:GLN137
|
4.3
|
30.6
|
1.0
|
|
HA3
|
Q:GLY13
|
4.5
|
20.7
|
1.0
|
|
HE2
|
Q:HIS161
|
4.5
|
29.1
|
1.0
|
|
HZ3
|
Q:LYS18
|
4.5
|
12.0
|
1.0
|
|
HG2
|
Q:GLN137
|
4.5
|
25.2
|
1.0
|
|
CG
|
Q:ASP154
|
4.6
|
35.7
|
1.0
|
|
H
|
Q:ASP157
|
4.6
|
18.2
|
1.0
|
|
N
|
Q:GLY156
|
4.6
|
14.5
|
1.0
|
|
OD1
|
Q:ASP154
|
4.6
|
40.5
|
1.0
|
|
H
|
Q:GLY156
|
4.7
|
14.5
|
1.0
|
|
HG11
|
Q:VAL339
|
4.7
|
16.2
|
1.0
|
|
HG13
|
Q:VAL159
|
4.8
|
32.0
|
1.0
|
|
O2A
|
Q:ADP401
|
4.8
|
22.7
|
1.0
|
|
CG2
|
Q:VAL339
|
4.8
|
17.6
|
1.0
|
|
H
|
Q:SER14
|
4.8
|
22.6
|
1.0
|
|
CB
|
Q:GLN137
|
4.8
|
30.6
|
1.0
|
|
OD2
|
Q:ASP11
|
4.9
|
39.9
|
1.0
|
|
HG12
|
Q:VAL159
|
4.9
|
32.0
|
1.0
|
|
HA2
|
Q:GLY13
|
5.0
|
20.7
|
1.0
|
|
Magnesium binding site 9 out
of 9 in 8uz1
Go back to
Magnesium Binding Sites List in 8uz1
Magnesium binding site 9 out
of 9 in the Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx)
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Straight Actin Filament From ARP2/3 Branch Junction Sample (Adp-Befx) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Mg402
b:25.1
occ:1.00
|
F2
|
R:BEF403
|
1.8
|
23.5
|
1.0
|
|
O2B
|
R:ADP401
|
1.9
|
22.7
|
1.0
|
|
OE1
|
R:GLN137
|
2.0
|
45.6
|
1.0
|
|
O3B
|
R:ADP401
|
2.6
|
22.7
|
1.0
|
|
BE
|
R:BEF403
|
2.7
|
23.5
|
1.0
|
|
PB
|
R:ADP401
|
2.8
|
22.7
|
1.0
|
|
CD
|
R:GLN137
|
3.0
|
36.6
|
1.0
|
|
O1B
|
R:ADP401
|
3.3
|
22.7
|
1.0
|
|
HA3
|
R:GLY156
|
3.6
|
15.7
|
1.0
|
|
HE22
|
R:GLN137
|
3.6
|
39.9
|
1.0
|
|
F3
|
R:BEF403
|
3.6
|
23.5
|
1.0
|
|
NE2
|
R:GLN137
|
3.7
|
39.9
|
1.0
|
|
F1
|
R:BEF403
|
3.9
|
23.5
|
1.0
|
|
OD2
|
R:ASP154
|
4.0
|
42.3
|
1.0
|
|
HB3
|
R:GLN137
|
4.0
|
30.6
|
1.0
|
|
HG22
|
R:VAL339
|
4.1
|
17.6
|
1.0
|
|
HG3
|
R:GLN137
|
4.1
|
25.2
|
1.0
|
|
CG
|
R:GLN137
|
4.1
|
25.2
|
1.0
|
|
O3A
|
R:ADP401
|
4.1
|
22.7
|
1.0
|
|
HA3
|
R:GLY13
|
4.3
|
20.7
|
1.0
|
|
HZ2
|
R:LYS18
|
4.4
|
12.0
|
1.0
|
|
HA2
|
R:GLY156
|
4.4
|
15.7
|
1.0
|
|
CA
|
R:GLY156
|
4.5
|
15.7
|
1.0
|
|
HA2
|
R:GLY13
|
4.5
|
20.7
|
1.0
|
|
HE2
|
R:HIS161
|
4.6
|
29.1
|
1.0
|
|
H
|
R:SER14
|
4.6
|
22.6
|
1.0
|
|
HG11
|
R:VAL339
|
4.6
|
16.2
|
1.0
|
|
HE21
|
R:GLN137
|
4.6
|
39.9
|
1.0
|
|
CB
|
R:GLN137
|
4.6
|
30.6
|
1.0
|
|
OD2
|
R:ASP11
|
4.7
|
39.9
|
1.0
|
|
OD1
|
R:ASP11
|
4.7
|
42.8
|
1.0
|
|
H
|
R:ASP157
|
4.8
|
18.2
|
1.0
|
|
HG13
|
R:VAL159
|
4.9
|
32.0
|
1.0
|
|
CG
|
R:ASP154
|
4.9
|
35.7
|
1.0
|
|
O2A
|
R:ADP401
|
4.9
|
22.7
|
1.0
|
|
CA
|
R:GLY13
|
5.0
|
20.7
|
1.0
|
|
OD1
|
R:ASP154
|
5.0
|
40.5
|
1.0
|
|
Reference:
S.S.Chavali,
S.Z.Chou,
W.Cao,
T.D.Pollard,
E.M.De La Cruz,
C.V.Sindelar.
High Resolution Cryo-Em Structures Reveal How Phosphate Release From ARP3 Weakens Actin Filament Branches Formed By the ARP2/3 Complex To Be Published.
Page generated: Fri Oct 4 21:53:51 2024
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