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Magnesium in PDB 8uz7: Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome

Protein crystallography data

The structure of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome, PDB code: 8uz7 was solved by R.R.Sotelo-Mundo, A.C.Gomez-Yanes, A.A.Lopez-Zavala, J.A.Lopez-Garcia, A.Ochoa-Leyva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.45 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.564, 84.253, 73.739, 90, 92.69, 90
R / Rfree (%) 18.9 / 19.1

Other elements in 8uz7:

The structure of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome (pdb code 8uz7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome, PDB code: 8uz7:

Magnesium binding site 1 out of 1 in 8uz7

Go back to Magnesium Binding Sites List in 8uz7
Magnesium binding site 1 out of 1 in the Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Novel Triose Phosphate Isomerase Identified on the Shrimp Transcriptome within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg303

b:16.3
occ:0.90
O C:HOH445 2.0 18.2 1.0
O C:HOH448 2.0 27.6 1.0
O C:HOH421 2.0 19.2 1.0
O C:HOH426 2.0 20.3 1.0
OD1 C:ASN195 2.1 18.8 1.0
CG C:ASN195 3.1 24.6 1.0
ND2 C:ASN195 3.5 22.8 1.0
O C:HOH465 4.2 20.2 1.0
OD2 C:ASP191 4.2 20.9 1.0
OD1 C:ASP191 4.3 23.0 1.0
CB C:ASN195 4.4 19.1 1.0
CG C:ASP191 4.6 22.6 1.0
CA C:ASN195 4.7 18.2 1.0

Reference:

R.R.Sotelo-Mundo, A.C.Gomez-Yanes, A.A.Lopez-Zavala, A.Ochoa-Leyva. Crystal Structure of A Novel Triose Phosphate Isomerase From Shrimp To Be Published.
Page generated: Fri Oct 4 21:53:49 2024

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