Magnesium in PDB 8v2z: Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C
(pdb code 8v2z). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C, PDB code: 8v2z:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 8v2z
Go back to
Magnesium Binding Sites List in 8v2z
Magnesium binding site 1 out
of 5 in the Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:88.8
occ:1.00
|
O3B
|
A:ADP401
|
2.2
|
123.3
|
1.0
|
PB
|
A:ADP401
|
3.5
|
123.1
|
1.0
|
O2A
|
A:ADP401
|
3.6
|
116.8
|
1.0
|
O2B
|
A:ADP401
|
3.8
|
121.0
|
1.0
|
OE1
|
A:GLN137
|
3.9
|
129.3
|
1.0
|
OD2
|
A:ASP11
|
4.1
|
132.5
|
1.0
|
CA
|
A:GLY13
|
4.2
|
119.7
|
1.0
|
OD2
|
A:ASP154
|
4.2
|
128.0
|
1.0
|
NE2
|
A:GLN137
|
4.3
|
124.2
|
1.0
|
CD
|
A:GLN137
|
4.4
|
124.7
|
1.0
|
O3A
|
A:ADP401
|
4.5
|
122.6
|
1.0
|
OD1
|
A:ASP11
|
4.5
|
133.2
|
1.0
|
NZ
|
A:LYS18
|
4.6
|
111.1
|
1.0
|
O1B
|
A:ADP401
|
4.6
|
123.7
|
1.0
|
PA
|
A:ADP401
|
4.6
|
120.7
|
1.0
|
CG
|
A:ASP11
|
4.7
|
131.5
|
1.0
|
CA
|
A:GLY156
|
4.8
|
111.0
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 8v2z
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Magnesium Binding Sites List in 8v2z
Magnesium binding site 2 out
of 5 in the Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:76.8
occ:1.00
|
O3B
|
B:ADP401
|
2.2
|
114.6
|
1.0
|
O2A
|
B:ADP401
|
3.4
|
108.6
|
1.0
|
PB
|
B:ADP401
|
3.5
|
117.3
|
1.0
|
O2B
|
B:ADP401
|
3.8
|
108.5
|
1.0
|
OD2
|
B:ASP11
|
4.0
|
126.1
|
1.0
|
OE1
|
B:GLN137
|
4.0
|
130.8
|
1.0
|
CA
|
B:GLY13
|
4.2
|
106.8
|
1.0
|
NZ
|
B:LYS18
|
4.2
|
95.7
|
1.0
|
NE2
|
B:GLN137
|
4.3
|
120.9
|
1.0
|
O3A
|
B:ADP401
|
4.3
|
110.8
|
1.0
|
CD
|
B:GLN137
|
4.4
|
124.5
|
1.0
|
OD2
|
B:ASP154
|
4.4
|
118.2
|
1.0
|
OD1
|
B:ASP11
|
4.4
|
127.4
|
1.0
|
PA
|
B:ADP401
|
4.5
|
108.5
|
1.0
|
O1B
|
B:ADP401
|
4.6
|
118.2
|
1.0
|
CG
|
B:ASP11
|
4.6
|
125.6
|
1.0
|
CA
|
B:GLY156
|
4.9
|
108.1
|
1.0
|
N
|
B:GLY13
|
4.9
|
106.6
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 8v2z
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Magnesium Binding Sites List in 8v2z
Magnesium binding site 3 out
of 5 in the Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:85.1
occ:1.00
|
O3B
|
C:ADP401
|
2.3
|
114.0
|
1.0
|
PB
|
C:ADP401
|
3.6
|
112.9
|
1.0
|
O2A
|
C:ADP401
|
3.7
|
110.9
|
1.0
|
O2B
|
C:ADP401
|
3.9
|
104.2
|
1.0
|
OE1
|
C:GLN137
|
3.9
|
130.8
|
1.0
|
OD2
|
C:ASP11
|
4.0
|
122.8
|
1.0
|
OD2
|
C:ASP154
|
4.2
|
121.6
|
1.0
|
NE2
|
C:GLN137
|
4.2
|
128.0
|
1.0
|
NZ
|
C:LYS18
|
4.2
|
97.4
|
1.0
|
CD
|
C:GLN137
|
4.3
|
125.8
|
1.0
|
OD1
|
C:ASP11
|
4.4
|
125.8
|
1.0
|
CA
|
C:GLY13
|
4.4
|
110.3
|
1.0
|
O3A
|
C:ADP401
|
4.5
|
111.4
|
1.0
|
CG
|
C:ASP11
|
4.6
|
123.4
|
1.0
|
O1B
|
C:ADP401
|
4.6
|
116.6
|
1.0
|
PA
|
C:ADP401
|
4.6
|
111.4
|
1.0
|
CG2
|
C:VAL339
|
4.9
|
93.2
|
1.0
|
CA
|
C:GLY156
|
4.9
|
103.5
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 8v2z
Go back to
Magnesium Binding Sites List in 8v2z
Magnesium binding site 4 out
of 5 in the Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:85.8
occ:1.00
|
O3B
|
D:ADP401
|
2.5
|
109.6
|
1.0
|
O2A
|
D:ADP401
|
3.5
|
113.4
|
1.0
|
PB
|
D:ADP401
|
3.7
|
118.3
|
1.0
|
OE1
|
D:GLN137
|
3.9
|
127.3
|
1.0
|
O2B
|
D:ADP401
|
3.9
|
116.1
|
1.0
|
OD2
|
D:ASP11
|
4.1
|
123.9
|
1.0
|
OD2
|
D:ASP154
|
4.1
|
121.7
|
1.0
|
NE2
|
D:GLN137
|
4.3
|
122.7
|
1.0
|
CD
|
D:GLN137
|
4.3
|
123.2
|
1.0
|
CA
|
D:GLY13
|
4.5
|
114.7
|
1.0
|
OD1
|
D:ASP11
|
4.5
|
127.1
|
1.0
|
O3A
|
D:ADP401
|
4.6
|
120.4
|
1.0
|
PA
|
D:ADP401
|
4.6
|
112.7
|
1.0
|
CG
|
D:ASP11
|
4.7
|
123.8
|
1.0
|
CA
|
D:GLY156
|
4.8
|
104.0
|
1.0
|
O1B
|
D:ADP401
|
4.9
|
121.8
|
1.0
|
CG2
|
D:VAL339
|
4.9
|
96.9
|
1.0
|
CG
|
D:ASP154
|
5.0
|
122.7
|
1.0
|
OD1
|
D:ASP154
|
5.0
|
125.1
|
1.0
|
CE
|
D:LYS18
|
5.0
|
103.7
|
1.0
|
NZ
|
D:LYS18
|
5.0
|
103.0
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 8v2z
Go back to
Magnesium Binding Sites List in 8v2z
Magnesium binding site 5 out
of 5 in the Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg402
b:91.8
occ:1.00
|
O3B
|
E:ADP401
|
2.4
|
119.0
|
1.0
|
O2A
|
E:ADP401
|
3.5
|
116.0
|
1.0
|
PB
|
E:ADP401
|
3.6
|
122.8
|
1.0
|
O2B
|
E:ADP401
|
3.8
|
122.0
|
1.0
|
OE1
|
E:GLN137
|
4.0
|
134.8
|
1.0
|
OD2
|
E:ASP11
|
4.0
|
137.2
|
1.0
|
NE2
|
E:GLN137
|
4.2
|
132.2
|
1.0
|
CA
|
E:GLY13
|
4.2
|
126.2
|
1.0
|
OD2
|
E:ASP154
|
4.3
|
130.6
|
1.0
|
CD
|
E:GLN137
|
4.3
|
132.3
|
1.0
|
OD1
|
E:ASP11
|
4.5
|
138.8
|
1.0
|
O3A
|
E:ADP401
|
4.5
|
125.4
|
1.0
|
PA
|
E:ADP401
|
4.6
|
118.3
|
1.0
|
CG
|
E:ASP11
|
4.6
|
137.5
|
1.0
|
NZ
|
E:LYS18
|
4.7
|
117.7
|
1.0
|
O1B
|
E:ADP401
|
4.7
|
125.3
|
1.0
|
CE
|
E:LYS18
|
4.8
|
114.5
|
1.0
|
CA
|
E:GLY156
|
4.9
|
109.0
|
1.0
|
N
|
E:GLY13
|
5.0
|
122.4
|
1.0
|
|
Reference:
R.H.Ceron,
F.A.Baez-Cruz,
N.J.Palmer,
P.J.Carman,
M.Boczkowska,
R.O.Heuckeroth,
E.M.Ostap,
R.Dominguez.
Smooth Muscle Gamma Actin (ACTG2) Filament Mutant R257C To Be Published.
Page generated: Fri Oct 4 21:56:21 2024
|