Magnesium in PDB 8v5r: Active Conformation of Dna Polymerase Gamma Bound to Dna

The binding sites of Magnesium atom in the Active Conformation of Dna Polymerase Gamma Bound to Dna (pdb code 8v5r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Active Conformation of Dna Polymerase Gamma Bound to Dna, PDB code: 8v5r:

Magnesium binding site 1 out of 1 in the Active Conformation of Dna Polymerase Gamma Bound to Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Active Conformation of Dna Polymerase Gamma Bound to Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:40.4 occ:1.00 O1G A:D3T1302 2.1 46.6 1.0 O1B A:D3T1302 2.1 46.6 1.0 O A:VAL891 2.4 41.3 1.0 OD2 A:ASP1135 2.4 41.2 1.0 O1A A:D3T1302 3.0 46.6 1.0 OD2 A:ASP890 3.1 40.6 1.0 OD1 A:ASP890 3.2 40.6 1.0 PG A:D3T1302 3.2 46.6 1.0 PB A:D3T1302 3.3 46.6 1.0 CG A:ASP890 3.4 40.6 1.0 O3G A:D3T1302 3.6 46.6 1.0 C A:VAL891 3.6 41.3 1.0 CG A:ASP1135 3.6 41.2 1.0 O3B A:D3T1302 3.7 46.6 1.0 PA A:D3T1302 3.8 46.6 1.0 O3A A:D3T1302 3.8 46.6 1.0 O5' A:D3T1302 4.0 46.6 1.0 N A:VAL891 4.4 41.3 1.0 OD1 A:ASP1135 4.4 41.2 1.0 CA A:VAL891 4.5 41.3 1.0 N A:SER893 4.5 47.1 1.0 CB A:ASP1135 4.5 41.2 1.0 O2G A:D3T1302 4.5 46.6 1.0 N A:ASP892 4.6 44.0 1.0 C5' A:D3T1302 4.6 46.6 1.0 O2B A:D3T1302 4.6 46.6 1.0 CA A:ASP892 4.7 44.0 1.0 CB A:ASP890 4.7 40.6 1.0 CB A:VAL891 4.8 41.3 1.0 C A:ASP890 4.9 40.6 1.0

A.A.Riccio, A.J.Brannon, J.M.Krahn, J.Bouvette, J.G.Williams, M.J.Borgnia, W.C.Copeland. Coordinated Dna Polymerization By Pol Gamma and the Region of LONP1 Regulated Proteolysis. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 38932681
DOI: 10.1093/NAR/GKAE539