Magnesium in PDB 8vmf: Crystal Structure of A Transition-State Mimic of the Gsk-3/Axin Complex Bound to A Beta-Catenin S45D Peptide

Enzymatic activity of Crystal Structure of A Transition-State Mimic of the Gsk-3/Axin Complex Bound to A Beta-Catenin S45D Peptide

Protein crystallography data

Other elements in 8vmf:

Magnesium Binding Sites:

Magnesium binding site 1 out of 2 in 8vmf

Magnesium Binding Sites List in 8vmf

Magnesium binding site 1 out of 2 in the Crystal Structure of A Transition-State Mimic of the Gsk-3/Axin Complex Bound to A Beta-Catenin S45D Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Transition-State Mimic of the Gsk-3/Axin Complex Bound to A Beta-Catenin S45D Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:70.5 occ:1.00 O1B A:ADP504 2.5 100.5 0.8 OD1 A:ASN186 2.5 51.6 1.0 OD2 A:ASP200 2.8 71.0 1.0 O A:HOH703 2.9 64.7 1.0 O5' A:ADP504 3.3 94.7 0.8 AL A:AF3503 3.4 83.2 0.6 C5' A:ADP504 3.6 95.9 0.8 F3 A:AF3503 3.6 89.5 0.6 CG A:ASN186 3.6 47.8 1.0 O3A A:ADP504 3.7 97.5 0.8 PB A:ADP504 3.7 100.2 0.8 F1 A:AF3503 3.8 64.8 0.6 CG A:ASP200 3.8 67.1 1.0 ND2 A:ASN186 4.1 51.2 1.0 CE A:LYS183 4.2 51.9 1.0 PA A:ADP504 4.2 94.9 0.8 C3' A:ADP504 4.3 93.3 0.8 CB A:ASP200 4.3 61.5 1.0 F2 A:AF3503 4.3 86.3 0.6 O3' A:ADP504 4.4 94.7 0.8 O3B A:ADP504 4.4 102.3 0.8 NZ A:LYS183 4.4 59.2 1.0 C4' A:ADP504 4.5 94.5 0.8 O A:GLN185 4.5 49.2 1.0 CB A:GLN185 4.6 47.4 1.0 C A:GLN185 4.7 45.8 1.0 OD1 A:ASP200 4.8 62.9 1.0 O1A A:ADP504 4.9 93.3 0.8 CB A:ASN186 4.9 45.7 1.0 O2B A:ADP504 4.9 100.2 0.8 CA A:GLY65 4.9 82.9 0.4 N A:ASN186 4.9 45.7 1.0 CA A:ASN186 5.0 46.7 1.0

Magnesium binding site 2 out of 2 in 8vmf

Magnesium Binding Sites List in 8vmf

Magnesium binding site 2 out of 2 in the Crystal Structure of A Transition-State Mimic of the Gsk-3/Axin Complex Bound to A Beta-Catenin S45D Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Transition-State Mimic of the Gsk-3/Axin Complex Bound to A Beta-Catenin S45D Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:82.7 occ:1.00 O3B A:ADP504 2.3 102.3 0.8 O A:HOH647 2.6 61.2 1.0 OD1 A:ASP200 2.6 62.9 1.0 F2 A:AF3503 2.8 86.3 0.6 CG A:ASP200 3.6 67.1 1.0 CE1 A:PHE67 3.6 126.1 0.6 PB A:ADP504 3.7 100.2 0.8 OD2 A:ASP200 3.7 71.0 1.0 CZ A:PHE67 3.8 124.4 0.6 CA A:GLY202 3.9 55.8 1.0 CD1 A:PHE67 4.0 124.7 0.6 O3A A:ADP504 4.1 97.5 0.8 CB A:PHE67 4.2 124.8 0.4 N A:GLY202 4.3 54.1 1.0 C A:GLY202 4.3 59.9 1.0 AL A:AF3503 4.3 83.2 0.6 CE2 A:PHE67 4.4 122.8 0.6 NZ A:LYS85 4.4 67.7 1.0 CD1 A:PHE67 4.5 123.4 0.4 CG A:PHE67 4.5 124.5 0.6 O1B A:ADP504 4.6 100.5 0.8 OG A:SER203 4.6 61.6 1.0 CD2 A:PHE67 4.7 123.8 0.6 O2B A:ADP504 4.7 100.2 0.8 CG A:PHE67 4.7 124.6 0.4 N A:SER203 4.7 56.4 1.0 O A:GLY202 4.8 70.0 1.0 OD2 A:ASP181 4.9 57.9 1.0 CB A:ASP200 5.0 61.5 1.0

Reference: