Magnesium in PDB 8vo5: Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 1)

The binding sites of Magnesium atom in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 1) (pdb code 8vo5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 1), PDB code: 8vo5:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:8.5 occ:1.00 O3B B:ADP401 2.2 14.2 1.0 O2A B:ADP401 3.7 14.2 1.0 PB B:ADP401 3.7 14.2 1.0 NE2 B:GLN137 4.0 11.0 1.0 OE1 B:GLN137 4.0 11.0 1.0 O2B B:ADP401 4.2 14.2 1.0 CD B:GLN137 4.2 11.0 1.0 OD2 B:ASP11 4.3 13.4 1.0 OD2 B:ASP154 4.4 7.9 1.0 O3A B:ADP401 4.5 14.2 1.0 CA B:GLY156 4.6 7.7 1.0 O1B B:ADP401 4.6 14.2 1.0 CA B:GLY13 4.6 9.7 1.0 PA B:ADP401 4.7 14.2 1.0 OD1 B:ASP11 4.8 13.4 1.0 OD1 B:ASP154 4.9 7.9 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:14.2 occ:1.00 O3B C:ADP401 2.4 5.7 1.0 O2A C:ADP401 3.5 5.7 1.0 PB C:ADP401 3.8 5.7 1.0 OE1 C:GLN137 4.0 7.5 1.0 OD2 C:ASP154 4.2 6.3 1.0 CD C:GLN137 4.4 7.5 1.0 OD1 C:ASP11 4.4 11.6 1.0 OD2 C:ASP11 4.4 11.6 1.0 O3A C:ADP401 4.4 5.7 1.0 O2B C:ADP401 4.4 5.7 1.0 PA C:ADP401 4.5 5.7 1.0 CA C:GLY13 4.6 6.3 1.0 CA C:GLY156 4.8 6.1 1.0 O1B C:ADP401 4.8 5.7 1.0 CG C:ASP11 4.8 11.6 1.0 NE2 C:GLN137 4.9 7.5 1.0 CG C:GLN137 4.9 7.5 1.0 CG2 C:VAL339 4.9 6.5 1.0 CE C:LYS18 5.0 6.0 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Fascin Bound to F-Actin (Actin Binding Site 1) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:14.2 occ:1.00 O3B D:ADP401 2.4 4.5 1.0 O2A D:ADP401 3.6 4.5 1.0 PB D:ADP401 3.9 4.5 1.0 OD2 D:ASP154 3.9 5.2 1.0 NE2 D:GLN137 4.3 7.8 1.0 CD D:GLN137 4.4 7.8 1.0 OD2 D:ASP11 4.5 9.5 1.0 OE1 D:GLN137 4.5 7.8 1.0 O3A D:ADP401 4.5 4.5 1.0 O2B D:ADP401 4.5 4.5 1.0 OD1 D:ASP11 4.6 9.5 1.0 CA D:GLY156 4.6 5.7 1.0 CG2 D:VAL339 4.6 7.5 1.0 PA D:ADP401 4.6 4.5 1.0 CA D:GLY13 4.8 7.7 1.0 O1B D:ADP401 4.9 4.5 1.0 N D:GLY156 4.9 5.7 1.0 CG D:ASP154 4.9 5.2 1.0 NZ D:LYS18 5.0 7.1 1.0 CG D:ASP11 5.0 9.5 1.0

R.Gong, M.J.Reynolds, K.Hamilton, G.M.Alushin. Fascin Structural Plasticity Mediates Flexible Actin Bundle Construction Nat.Struct.Mol.Biol. 2025.
ISSN: ESSN 1545-9985