Magnesium in PDB 8vo7: Cryo-Em Structure of Fascin Crosslinked F-Actin

The binding sites of Magnesium atom in the Cryo-Em Structure of Fascin Crosslinked F-Actin (pdb code 8vo7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryo-Em Structure of Fascin Crosslinked F-Actin, PDB code: 8vo7:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Fascin Crosslinked F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:24.8 occ:1.00 O3B B:ADP401 2.5 39.1 1.0 PB B:ADP401 3.5 39.1 1.0 O2B B:ADP401 3.7 39.1 1.0 NE2 B:GLN137 4.1 35.1 1.0 OE1 B:GLN137 4.2 35.1 1.0 CD B:GLN137 4.2 35.1 1.0 O1B B:ADP401 4.3 39.1 1.0 OD2 B:ASP11 4.3 33.6 1.0 O2A B:ADP401 4.4 39.1 1.0 OD1 B:ASP11 4.6 33.6 1.0 CA B:GLY13 4.6 30.5 1.0 CA B:GLY156 4.6 30.5 1.0 NZ B:LYS18 4.8 31.2 1.0 O3A B:ADP401 4.8 39.1 1.0 CG B:ASP11 4.9 33.6 1.0

Magnesium binding site 2 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Fascin Crosslinked F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:27.5 occ:1.00 O3B C:ADP401 2.1 39.1 1.0 PB C:ADP401 3.6 39.1 1.0 OD2 C:ASP154 4.2 22.8 1.0 O2A C:ADP401 4.2 39.1 1.0 OE1 C:GLN137 4.2 25.4 1.0 O1B C:ADP401 4.2 39.1 1.0 NZ C:LYS18 4.4 27.0 1.0 CD C:GLN137 4.4 25.4 1.0 O3A C:ADP401 4.4 39.1 1.0 O2B C:ADP401 4.6 39.1 1.0 CA C:GLY156 4.8 27.1 1.0 CA C:GLY13 4.8 26.4 1.0 NE2 C:GLN137 4.8 25.4 1.0 CG C:GLN137 4.8 25.4 1.0 PA C:ADP401 4.9 39.1 1.0 CG2 C:VAL339 4.9 23.3 1.0

Magnesium binding site 3 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Fascin Crosslinked F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:25.6 occ:1.00 O3B D:ADP401 2.5 39.1 1.0 O2A D:ADP401 3.5 39.1 1.0 PB D:ADP401 3.9 39.1 1.0 OD2 D:ASP154 3.9 26.5 1.0 NE2 D:GLN137 4.3 29.7 1.0 CD D:GLN137 4.3 29.7 1.0 OD2 D:ASP11 4.4 31.4 1.0 OE1 D:GLN137 4.5 29.7 1.0 CG2 D:VAL339 4.5 27.5 1.0 O2B D:ADP401 4.5 39.1 1.0 O3A D:ADP401 4.5 39.1 1.0 OD1 D:ASP11 4.6 31.4 1.0 PA D:ADP401 4.6 39.1 1.0 CA D:GLY13 4.8 30.1 1.0 CA D:GLY156 4.8 29.6 1.0 CG D:GLN137 4.8 29.7 1.0 CG D:ASP154 4.9 26.5 1.0 CG D:ASP11 5.0 31.4 1.0 OD1 D:ASP154 5.0 26.5 1.0 O1B D:ADP401 5.0 39.1 1.0

Magnesium binding site 4 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Fascin Crosslinked F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:39.9 occ:1.00 O3B E:ADP401 2.5 43.2 1.0 OE1 E:GLN137 3.4 43.8 1.0 O2A E:ADP401 3.4 43.2 1.0 OD2 E:ASP11 3.8 46.0 1.0 PB E:ADP401 3.9 43.2 1.0 CD E:GLN137 4.1 43.8 1.0 NE2 E:GLN137 4.3 43.8 1.0 OD2 E:ASP154 4.3 43.3 1.0 OD1 E:ASP11 4.3 46.0 1.0 O3A E:ADP401 4.4 43.2 1.0 PA E:ADP401 4.4 43.2 1.0 CG E:ASP11 4.5 46.0 1.0 O2B E:ADP401 4.5 43.2 1.0 CG2 E:VAL339 4.6 42.6 1.0 CA E:GLY156 4.8 41.4 1.0 OD1 E:ASP154 4.8 43.3 1.0 CA E:GLY13 4.9 44.6 1.0 O1A E:ADP401 5.0 43.2 1.0 CG E:ASP154 5.0 43.3 1.0 O1B E:ADP401 5.0 43.2 1.0

Magnesium binding site 5 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Fascin Crosslinked F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:30.2 occ:1.00 O3B F:ADP401 2.5 40.2 1.0 O2A F:ADP401 3.6 40.2 1.0 PB F:ADP401 3.9 40.2 1.0 OD2 F:ASP11 4.1 35.7 1.0 OD1 F:ASP11 4.3 35.7 1.0 OD2 F:ASP154 4.3 38.6 1.0 O2B F:ADP401 4.3 40.2 1.0 NE2 F:GLN137 4.3 38.6 1.0 CG F:GLN137 4.4 38.6 1.0 OD1 F:ASP154 4.5 38.6 1.0 CG F:ASP11 4.6 35.7 1.0 O3A F:ADP401 4.6 40.2 1.0 CG2 F:VAL339 4.6 35.8 1.0 PA F:ADP401 4.6 40.2 1.0 NZ F:LYS18 4.7 35.5 1.0 CG F:ASP154 4.8 38.6 1.0 CD F:GLN137 4.9 38.6 1.0 CA F:GLY156 5.0 38.4 1.0 O1B F:ADP401 5.0 40.2 1.0 CB F:VAL339 5.0 35.8 1.0

Magnesium binding site 6 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Fascin Crosslinked F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:40.5 occ:1.00 OG G:SER14 2.9 36.2 1.0 N G:VAL159 3.8 34.8 1.0 CG1 G:VAL159 3.8 34.8 1.0 CA G:GLY158 3.9 35.5 1.0 N G:GLY158 3.9 35.5 1.0 CB G:SER14 3.9 36.2 1.0 N G:SER14 4.0 36.2 1.0 C G:GLY158 4.3 35.5 1.0 CA G:GLY74 4.3 39.4 1.0 N G:GLY74 4.5 39.4 1.0 CB G:VAL159 4.6 34.8 1.0 CA G:SER14 4.6 36.2 1.0 O G:VAL159 4.6 34.8 1.0 O3B G:ADP401 4.6 36.3 1.0 CA G:VAL159 4.7 34.8 1.0 O2B G:ADP401 4.8 36.3 1.0 CA G:GLY13 4.9 36.8 1.0 CA G:GLY156 4.9 34.7 1.0 C G:GLY13 5.0 36.8 1.0 N G:ASP157 5.0 35.9 1.0

R.Gong, M.J.Reynolds, K.Hamilton, G.M.Alushin. Fascin Structural Plasticity Mediates Flexible Actin Bundle Construction Nat.Struct.Mol.Biol. 2025.
ISSN: ESSN 1545-9985