Magnesium in PDB 8vo8: Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT)

The binding sites of Magnesium atom in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT) (pdb code 8vo8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT), PDB code: 8vo8:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:88.6 occ:1.00 O3B B:ADP401 2.4 98.4 1.0 PB B:ADP401 3.8 98.4 1.0 O2A B:ADP401 4.0 98.4 1.0 CA B:GLY13 4.2 100.1 1.0 O2B B:ADP401 4.2 98.4 1.0 CG B:GLN137 4.7 103.5 1.0 OD2 B:ASP154 4.7 100.8 1.0 CA B:GLY156 4.7 97.2 1.0 O3A B:ADP401 4.7 98.4 1.0 OD1 B:ASP11 4.8 114.8 1.0 O1B B:ADP401 4.8 98.4 1.0 N B:GLY13 5.0 100.1 1.0 PA B:ADP401 5.0 98.4 1.0

Magnesium binding site 2 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:73.8 occ:1.00 O3B C:ADP401 2.4 86.1 1.0 CA C:GLY13 3.8 84.8 1.0 PB C:ADP401 3.8 86.1 1.0 OD1 C:ASP11 4.2 88.8 1.0 CG C:GLN137 4.4 77.1 1.0 O1B C:ADP401 4.5 86.1 1.0 OD2 C:ASP154 4.5 80.0 1.0 O2A C:ADP401 4.5 86.1 1.0 O2B C:ADP401 4.6 86.1 1.0 N C:GLY13 4.6 84.8 1.0 NE2 C:GLN137 4.6 77.1 1.0 OD2 C:ASP11 4.7 88.8 1.0 O3A C:ADP401 4.7 86.1 1.0 CA C:GLY156 4.8 80.6 1.0 CD C:GLN137 4.8 77.1 1.0 N C:SER14 4.8 84.3 1.0 CG C:ASP11 4.9 88.8 1.0 C C:GLY13 4.9 84.8 1.0

Magnesium binding site 3 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:80.4 occ:1.00 O3B D:ADP401 2.4 94.4 1.0 PB D:ADP401 3.7 94.4 1.0 OD2 D:ASP11 3.9 111.2 1.0 CA D:GLY13 4.0 98.1 1.0 O2B D:ADP401 4.0 94.4 1.0 NE2 D:GLN137 4.2 95.5 1.0 OD1 D:ASP11 4.4 111.2 1.0 O2A D:ADP401 4.4 94.4 1.0 CD D:GLN137 4.5 95.5 1.0 O1B D:ADP401 4.5 94.4 1.0 CG D:ASP11 4.6 111.2 1.0 OD2 D:ASP154 4.7 91.1 1.0 O3A D:ADP401 4.8 94.4 1.0 OE1 D:GLN137 4.8 95.5 1.0 N D:GLY13 4.8 98.1 1.0

Magnesium binding site 4 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:75.1 occ:1.00 O3B E:ADP401 2.1 89.7 1.0 O2A E:ADP401 2.8 89.7 1.0 PB E:ADP401 3.3 89.7 1.0 O2B E:ADP401 3.7 89.7 1.0 PA E:ADP401 3.9 89.7 1.0 O3A E:ADP401 3.9 89.7 1.0 CA E:GLY156 4.3 93.1 1.0 OD1 E:ASP154 4.3 93.4 1.0 CA E:GLY301 4.6 90.2 1.0 O1B E:ADP401 4.6 89.7 1.0 CG2 E:VAL339 4.6 89.1 1.0 O1A E:ADP401 4.7 89.7 1.0 NZ E:LYS18 4.8 91.4 1.0 CE E:LYS18 4.9 91.4 1.0 N E:GLY156 4.9 93.1 1.0

Magnesium binding site 5 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:87.7 occ:1.00 O3B F:ADP401 2.1 90.8 1.0 OE1 F:GLN137 3.0 94.5 1.0 PB F:ADP401 3.3 90.8 1.0 O2B F:ADP401 3.8 90.8 1.0 CD F:GLN137 4.0 94.5 1.0 CA F:GLY13 4.1 93.8 1.0 O1B F:ADP401 4.1 90.8 1.0 OD1 F:ASP11 4.2 101.6 1.0 OD1 F:ASP154 4.3 89.1 1.0 O2A F:ADP401 4.3 90.8 1.0 NE2 F:GLN137 4.4 94.5 1.0 OD2 F:ASP11 4.4 101.6 1.0 O3A F:ADP401 4.5 90.8 1.0 CA F:GLY156 4.6 86.1 1.0 CG F:ASP11 4.8 101.6 1.0 OD2 F:ASP154 4.9 89.1 1.0 N F:GLY13 4.9 93.8 1.0 N F:SER14 4.9 90.2 1.0

Magnesium binding site 6 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_LEFT) within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:78.8 occ:1.00 O3B G:ADP401 2.0 85.5 1.0 O2A G:ADP401 2.7 85.5 1.0 PB G:ADP401 3.3 85.5 1.0 PA G:ADP401 3.7 85.5 1.0 O3A G:ADP401 3.8 85.5 1.0 O2B G:ADP401 3.9 85.5 1.0 OD2 G:ASP11 4.1 93.9 1.0 OD2 G:ASP154 4.2 85.4 1.0 O1A G:ADP401 4.3 85.5 1.0 CA G:GLY156 4.5 85.0 1.0 O1B G:ADP401 4.6 85.5 1.0 OD1 G:ASP11 4.7 93.9 1.0 CA G:GLY301 4.8 85.3 1.0 CA G:GLY13 4.8 87.9 1.0 CG G:ASP11 4.9 93.9 1.0 OD1 G:ASP154 4.9 85.4 1.0 CE G:LYS18 4.9 86.1 1.0 N G:GLY156 4.9 85.0 1.0 CG G:ASP154 4.9 85.4 1.0 CG2 G:VAL339 5.0 86.3 1.0 NZ G:LYS18 5.0 86.1 1.0

R.Gong, M.J.Reynolds, K.Hamilton, G.M.Alushin. Fascin Structural Plasticity Mediates Flexible Actin Bundle Construction Nat.Struct.Mol.Biol. 2025.
ISSN: ESSN 1545-9985