Magnesium in PDB 8vo9: Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE)

The binding sites of Magnesium atom in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE) (pdb code 8vo9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE), PDB code: 8vo9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:51.5 occ:1.00 O3B B:ADP401 2.3 63.2 1.0 OE1 B:GLN137 3.7 70.6 1.0 NE2 B:GLN137 3.8 70.6 1.0 PB B:ADP401 3.8 63.2 1.0 O2A B:ADP401 3.8 63.2 1.0 CD B:GLN137 4.0 70.6 1.0 OD2 B:ASP154 4.4 63.3 1.0 O2B B:ADP401 4.4 63.2 1.0 O3A B:ADP401 4.5 63.2 1.0 OD1 B:ASP11 4.6 72.3 1.0 OD2 B:ASP11 4.6 72.3 1.0 CA B:GLY13 4.6 66.1 1.0 CA B:GLY156 4.6 60.6 1.0 PA B:ADP401 4.7 63.2 1.0 O1B B:ADP401 4.7 63.2 1.0 CG2 B:VAL339 4.9 66.5 1.0 OD1 B:ASP154 4.9 63.3 1.0

Magnesium binding site 2 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:49.9 occ:1.00 O3B C:ADP401 2.4 59.0 1.0 O2A C:ADP401 3.6 59.0 1.0 OD2 C:ASP154 3.7 52.5 1.0 PB C:ADP401 3.8 59.0 1.0 OE1 C:GLN137 4.1 59.1 1.0 OD2 C:ASP11 4.3 63.6 1.0 O2B C:ADP401 4.4 59.0 1.0 O3A C:ADP401 4.5 59.0 1.0 CD C:GLN137 4.5 59.1 1.0 OD1 C:ASP11 4.6 63.6 1.0 PA C:ADP401 4.6 59.0 1.0 CG C:ASP154 4.6 52.5 1.0 CA C:GLY156 4.7 53.7 1.0 OD1 C:ASP154 4.7 52.5 1.0 CA C:GLY13 4.7 57.6 1.0 CG2 C:VAL339 4.7 57.0 1.0 O1B C:ADP401 4.9 59.0 1.0 CG C:ASP11 4.9 63.6 1.0

Magnesium binding site 3 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:50.5 occ:1.00 O3B D:ADP401 2.4 62.0 1.0 O2A D:ADP401 3.3 62.0 1.0 PB D:ADP401 3.7 62.0 1.0 O2B D:ADP401 4.2 62.0 1.0 NE2 D:GLN137 4.2 64.1 1.0 OD2 D:ASP154 4.3 57.0 1.0 CA D:GLY156 4.3 57.4 1.0 O3A D:ADP401 4.4 62.0 1.0 CD D:GLN137 4.4 64.1 1.0 PA D:ADP401 4.5 62.0 1.0 OD1 D:ASP11 4.5 71.7 1.0 OD2 D:ASP11 4.5 71.7 1.0 CA D:GLY13 4.6 62.9 1.0 OE1 D:GLN137 4.6 64.1 1.0 N D:GLY156 4.8 57.4 1.0 O1B D:ADP401 4.8 62.0 1.0 CG2 D:VAL339 4.9 66.9 1.0 CG D:ASP11 5.0 71.7 1.0

Magnesium binding site 4 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:74.9 occ:1.00 O3B E:ADP401 2.2 73.8 1.0 O2A E:ADP401 3.6 73.8 1.0 PB E:ADP401 3.6 73.8 1.0 OD2 E:ASP11 3.8 89.3 1.0 OE1 E:GLN137 4.0 77.1 1.0 OD1 E:ASP11 4.2 89.3 1.0 O3A E:ADP401 4.2 73.8 1.0 NZ E:LYS18 4.3 82.8 1.0 CA E:GLY13 4.3 75.3 1.0 O2B E:ADP401 4.3 73.8 1.0 CE E:LYS18 4.3 82.8 1.0 PA E:ADP401 4.4 73.8 1.0 CD E:GLN137 4.4 77.1 1.0 CG E:ASP11 4.4 89.3 1.0 NE2 E:GLN137 4.5 77.1 1.0 OD2 E:ASP154 4.5 72.6 1.0 O1B E:ADP401 4.7 73.8 1.0 CG2 E:VAL339 4.7 81.8 1.0 CA E:GLY156 4.9 71.1 1.0 O1A E:ADP401 4.9 73.8 1.0

Magnesium binding site 5 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:57.3 occ:1.00 O3B F:ADP401 2.6 72.6 1.0 O2A F:ADP401 3.3 72.6 1.0 PB F:ADP401 3.9 72.6 1.0 OD1 F:ASP154 4.0 67.8 1.0 O2B F:ADP401 4.2 72.6 1.0 OD2 F:ASP154 4.2 67.8 1.0 OD2 F:ASP11 4.4 79.3 1.0 CA F:GLY156 4.4 66.1 1.0 PA F:ADP401 4.4 72.6 1.0 O3A F:ADP401 4.5 72.6 1.0 CG F:ASP154 4.6 67.8 1.0 OD1 F:ASP11 4.6 79.3 1.0 CG F:GLN137 4.7 71.9 1.0 CG2 F:VAL339 4.8 74.2 1.0 NZ F:LYS18 4.8 76.0 1.0 N F:GLY156 4.9 66.1 1.0 CG F:ASP11 5.0 79.3 1.0

Magnesium binding site 6 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_MIDDLE) within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:62.7 occ:1.00 O3B G:ADP401 2.4 61.3 1.0 O2A G:ADP401 3.5 61.3 1.0 PB G:ADP401 3.8 61.3 1.0 OE1 G:GLN137 3.9 71.1 1.0 OD2 G:ASP11 4.0 76.8 1.0 OD1 G:ASP11 4.3 76.8 1.0 CD G:GLN137 4.3 71.1 1.0 O3A G:ADP401 4.4 61.3 1.0 PA G:ADP401 4.4 61.3 1.0 OD1 G:ASP154 4.4 57.1 1.0 O2B G:ADP401 4.4 61.3 1.0 NE2 G:GLN137 4.5 71.1 1.0 CG2 G:VAL339 4.5 68.7 1.0 OD2 G:ASP154 4.5 57.1 1.0 CG G:ASP11 4.6 76.8 1.0 CA G:GLY156 4.7 58.2 1.0 CA G:GLY13 4.8 65.0 1.0 CB G:VAL339 4.9 68.7 1.0 CG G:ASP154 4.9 57.1 1.0 O1B G:ADP401 4.9 61.3 1.0 CE G:LYS18 5.0 69.7 1.0 O1A G:ADP401 5.0 61.3 1.0

R.Gong, M.J.Reynolds, K.Hamilton, G.M.Alushin. Fascin Structural Plasticity Mediates Flexible Actin Bundle Construction Nat.Struct.Mol.Biol. 2025.
ISSN: ESSN 1545-9985