Magnesium in PDB 8voa: Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT)

The binding sites of Magnesium atom in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT) (pdb code 8voa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT), PDB code: 8voa:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:74.0 occ:1.00 O3B B:ADP401 2.3 94.5 1.0 PB B:ADP401 3.5 94.5 1.0 O2A B:ADP401 3.6 94.5 1.0 O2B B:ADP401 3.7 94.5 1.0 OD2 B:ASP154 3.8 102.0 1.0 CA B:GLY156 4.1 96.3 1.0 O3A B:ADP401 4.5 94.5 1.0 O1B B:ADP401 4.5 94.5 1.0 CA B:GLY13 4.5 102.3 1.0 N B:GLY156 4.5 96.3 1.0 PA B:ADP401 4.7 94.5 1.0 CG B:ASP154 4.9 102.0 1.0

Magnesium binding site 2 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:87.5 occ:1.00 O3B C:ADP401 2.1 92.3 1.0 PB C:ADP401 3.3 92.3 1.0 O2B C:ADP401 3.6 92.3 1.0 O2A C:ADP401 4.0 92.3 1.0 CA C:GLY156 4.2 93.9 1.0 O1B C:ADP401 4.2 92.3 1.0 CA C:GLY13 4.2 93.1 1.0 OD2 C:ASP154 4.4 91.9 1.0 O3A C:ADP401 4.5 92.3 1.0 N C:SER14 4.7 91.5 1.0 CG C:GLN137 4.7 94.8 1.0 OD1 C:ASP154 4.8 91.9 1.0 PA C:ADP401 4.9 92.3 1.0 N C:GLY156 5.0 93.9 1.0

Magnesium binding site 3 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:100.2 occ:1.00 O3B D:ADP401 2.0 97.5 1.0 O2A D:ADP401 2.1 97.5 1.0 PB D:ADP401 3.1 97.5 1.0 PA D:ADP401 3.2 97.5 1.0 O2B D:ADP401 3.4 97.5 1.0 O3A D:ADP401 3.5 97.5 1.0 CA D:GLY156 3.9 96.3 1.0 O1A D:ADP401 4.0 97.5 1.0 N D:GLY156 4.4 96.3 1.0 O1B D:ADP401 4.4 97.5 1.0 O5' D:ADP401 4.5 97.5 1.0 CA D:GLY301 4.6 96.9 1.0 NZ D:LYS18 4.7 104.1 1.0 OD2 D:ASP154 4.8 99.7 1.0 N D:GLY302 4.9 94.5 1.0

Magnesium binding site 4 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:102.2 occ:1.00 O3B E:ADP401 2.3 103.2 1.0 O2A E:ADP401 2.6 103.2 1.0 CA E:GLY156 2.9 100.8 1.0 O2B E:ADP401 3.0 103.2 1.0 PB E:ADP401 3.1 103.2 1.0 N E:GLY156 3.7 100.8 1.0 PA E:ADP401 3.8 103.2 1.0 O3A E:ADP401 3.9 103.2 1.0 C E:GLY156 4.1 100.8 1.0 N E:ASP157 4.1 101.8 1.0 OD1 E:ASP154 4.2 109.7 1.0 OE1 E:GLN137 4.3 111.9 1.0 O1B E:ADP401 4.5 103.2 1.0 C E:SER155 4.7 103.0 1.0 O5' E:ADP401 4.8 103.2 1.0 CA E:GLY301 4.8 107.2 1.0 OD2 E:ASP154 4.9 109.7 1.0 O1A E:ADP401 4.9 103.2 1.0 OD1 E:ASP157 5.0 101.8 1.0 CG E:ASP154 5.0 109.7 1.0

Magnesium binding site 5 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:105.3 occ:1.00 O2A F:ADP401 2.1 105.3 1.0 O3B F:ADP401 2.3 105.3 1.0 PB F:ADP401 3.3 105.3 1.0 PA F:ADP401 3.4 105.3 1.0 O2B F:ADP401 3.5 105.3 1.0 O3A F:ADP401 3.6 105.3 1.0 CA F:GLY156 3.8 103.5 1.0 O1A F:ADP401 4.3 105.3 1.0 OD2 F:ASP154 4.4 102.3 1.0 CA F:GLY301 4.4 104.0 1.0 N F:GLY302 4.5 104.7 1.0 O5' F:ADP401 4.5 105.3 1.0 N F:GLY156 4.6 103.5 1.0 OD2 F:ASP11 4.6 114.9 1.0 O1B F:ADP401 4.7 105.3 1.0 OD1 F:ASP154 4.7 102.3 1.0 O F:SER155 4.7 100.1 1.0 CG2 F:VAL339 4.8 107.9 1.0 CG F:ASP154 4.9 102.3 1.0 C F:SER155 4.9 100.1 1.0 C F:GLY156 4.9 103.5 1.0 OE1 F:GLN137 5.0 105.3 1.0

Magnesium binding site 6 out of 6 in the Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Fascin Crosslinked F-Actin (EIGEN_RIGHT) within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:68.7 occ:1.00 O3B G:ADP401 2.2 90.1 1.0 O2A G:ADP401 3.6 90.1 1.0 PB G:ADP401 3.7 90.1 1.0 OD2 G:ASP154 4.1 90.6 1.0 CA G:GLY156 4.2 89.4 1.0 O2B G:ADP401 4.2 90.1 1.0 O3A G:ADP401 4.5 90.1 1.0 CA G:GLY13 4.5 95.8 1.0 PA G:ADP401 4.7 90.1 1.0 OD1 G:ASP154 4.7 90.6 1.0 O1B G:ADP401 4.7 90.1 1.0 N G:GLY156 4.7 89.4 1.0 CG G:ASP154 4.8 90.6 1.0 OD2 G:ASP11 4.9 108.5 1.0 OD1 G:ASP11 5.0 108.5 1.0

R.Gong, M.J.Reynolds, K.Hamilton, G.M.Alushin. Fascin Structural Plasticity Mediates Flexible Actin Bundle Construction Nat.Struct.Mol.Biol. 2025.
ISSN: ESSN 1545-9985