Magnesium in PDB 8vs6: L-Tgf-B3/AVB8

The structure of L-Tgf-B3/AVB8 also contains other interesting chemical elements:

Calcium

(Ca)

5 atoms

The binding sites of Magnesium atom in the L-Tgf-B3/AVB8 (pdb code 8vs6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the L-Tgf-B3/AVB8, PDB code: 8vs6:

Magnesium binding site 1 out of 1 in the L-Tgf-B3/AVB8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of L-Tgf-B3/AVB8 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg704 b:1.8 occ:1.00 OG B:SER116 2.0 20.4 1.0 HG B:SER114 2.1 12.9 1.0 OE1 B:GLU212 2.3 10.1 1.0 HG B:SER116 2.5 15.9 1.0 OG B:SER114 2.7 14.4 1.0 HB2 B:SER114 2.7 12.8 1.0 HG3 B:GLU212 2.9 10.3 1.0 OD1 E:ASP243 3.0 16.3 1.0 CD B:GLU212 3.1 8.2 1.0 HB3 B:SER116 3.1 16.0 1.0 CB B:SER116 3.1 19.4 1.0 CB B:SER114 3.2 7.1 1.0 H B:SER116 3.2 14.6 1.0 CG B:GLU212 3.4 9.7 1.0 HB3 B:SER114 3.6 12.7 1.0 HG3 B:GLN244 3.6 12.9 1.0 HB2 E:ASP243 3.7 4.7 1.0 HG2 B:GLU212 3.7 11.8 1.0 HB2 B:SER116 3.7 16.2 1.0 CG E:ASP243 3.8 6.7 1.0 OD1 B:ASP243 3.8 21.4 1.0 OD2 B:ASP112 3.9 6.5 1.0 HG2 B:GLN244 3.9 13.8 1.0 N B:SER116 4.0 7.9 1.0 HA E:ASP243 4.0 5.1 1.0 OE2 B:GLU212 4.1 13.6 1.0 CA B:SER116 4.1 6.0 1.0 CB E:ASP243 4.2 2.9 1.0 CG B:GLN244 4.2 13.1 1.0 O B:THR210 4.2 22.3 1.0 HB2 B:GLN244 4.2 12.7 1.0 CA B:SER114 4.5 8.9 1.0 OD1 B:ASP112 4.6 8.5 1.0 HA B:THR210 4.6 9.0 1.0 CA E:ASP243 4.6 3.5 1.0 CG B:ASP243 4.6 19.6 1.0 CG B:ASP112 4.7 13.0 1.0 OD2 E:ASP243 4.7 4.6 1.0 H B:ALA115 4.7 17.5 1.0 OD2 B:ASP243 4.7 18.1 1.0 C B:SER114 4.7 13.1 1.0 CB B:GLU212 4.8 7.5 1.0 CB B:GLN244 4.8 13.8 1.0 N B:ALA115 4.8 19.4 1.0 HG2 B:MET117 4.8 15.3 1.0 OD1 B:ASN207 4.8 16.8 1.0 HA B:SER116 4.9 14.2 1.0 H B:SER114 4.9 15.2 1.0 C B:SER116 4.9 16.1 1.0 HB2 B:GLU212 5.0 9.9 1.0 H B:MET117 5.0 16.7 1.0 HB3 B:GLU212 5.0 8.6 1.0

M.Jin, Y.Cheng, S.L.Nishimura. Dynamic Allostery Drives Autocrine and Paracrine Tgf-Beta Signaling Cell(Cambridge,Mass.) 2024.
ISSN: ISSN 0092-8674