Magnesium in PDB 8vsd: AVB8/L-Tgf-B1/Garp

The structure of AVB8/L-Tgf-B1/Garp also contains other interesting chemical elements:

Calcium

(Ca)

5 atoms

The binding sites of Magnesium atom in the AVB8/L-Tgf-B1/Garp (pdb code 8vsd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the AVB8/L-Tgf-B1/Garp, PDB code: 8vsd:

Magnesium binding site 1 out of 1 in the AVB8/L-Tgf-B1/Garp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of AVB8/L-Tgf-B1/Garp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg504 b:15.9 occ:1.00 OE2 B:GLU212 1.8 14.7 1.0 OG B:SER116 1.9 22.8 1.0 CD B:GLU212 2.5 14.7 1.0 OE1 B:GLU212 2.5 14.7 1.0 OD1 E:ASP217 2.8 20.9 1.0 CB B:SER116 3.0 22.8 1.0 OG B:SER114 3.1 23.7 1.0 CB B:SER114 3.5 23.7 1.0 CG B:GLU212 3.9 14.7 1.0 N B:SER116 3.9 22.8 1.0 CG E:ASP217 3.9 20.9 1.0 CA B:SER116 4.0 22.8 1.0 OD1 B:ASP243 4.0 18.5 1.0 OD2 B:ASP112 4.3 24.5 1.0 CB E:ASP217 4.5 20.9 1.0 O B:THR210 4.6 16.1 1.0 N B:MET117 4.7 27.3 1.0 C B:SER116 4.7 22.8 1.0 CG B:GLN244 4.8 17.9 1.0 CA B:SER114 4.8 23.7 1.0 N B:ALA115 4.9 21.0 1.0 CB B:GLU212 4.9 14.7 1.0 CA E:ASP217 4.9 20.9 1.0 C B:SER114 4.9 23.7 1.0 OD2 E:ASP217 4.9 20.9 1.0 CB B:GLN244 4.9 17.9 1.0

M.Jin, Y.Cheng, S.L.Nishimura. Dynamic Allostery Drives Autocrine and Paracrine Tgf-Beta Signaling Cell(Cambridge,Mass.) 2024.
ISSN: ISSN 0092-8674