Magnesium in PDB 8vsi: Mechanistic Insights Revealed By Ybtpq in the Occluded State

The structure of Mechanistic Insights Revealed By Ybtpq in the Occluded State also contains other interesting chemical elements:

Vanadium

(V)

2 atoms

The binding sites of Magnesium atom in the Mechanistic Insights Revealed By Ybtpq in the Occluded State (pdb code 8vsi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Mechanistic Insights Revealed By Ybtpq in the Occluded State, PDB code: 8vsi:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Mechanistic Insights Revealed By Ybtpq in the Occluded State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mechanistic Insights Revealed By Ybtpq in the Occluded State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:27.5 occ:1.00 O3G A:AOV702 2.1 28.1 1.0 OE1 A:GLN425 2.1 26.8 1.0 CB A:SER384 2.8 29.5 1.0 CD A:GLN425 3.0 26.8 1.0 O1B A:AOV702 3.1 28.1 1.0 O2A A:AOV702 3.2 28.1 1.0 OG A:SER384 3.5 29.5 1.0 NE2 A:GLN425 3.5 26.8 1.0 VG A:AOV702 3.7 28.1 1.0 O3B A:AOV702 3.9 28.1 1.0 PB A:AOV702 4.0 28.1 1.0 OD2 A:ASP505 4.1 29.0 1.0 N B:GLY484 4.1 24.2 1.0 CA A:SER384 4.2 29.5 1.0 PA A:AOV702 4.2 28.1 1.0 CG A:GLN425 4.3 26.8 1.0 N A:SER384 4.4 29.5 1.0 O3A A:AOV702 4.5 28.1 1.0 CB A:GLN425 4.5 26.8 1.0 O4G A:AOV702 4.5 28.1 1.0 O1A A:AOV702 4.6 28.1 1.0 CB B:SER483 4.6 24.9 1.0 O2G A:AOV702 4.7 28.1 1.0 OD1 A:ASP505 4.7 29.0 1.0 CG A:ASP505 4.8 29.0 1.0 CA B:SER483 4.8 24.9 1.0 CA B:GLY484 4.9 24.2 1.0 C B:SER483 5.0 24.9 1.0

Magnesium binding site 2 out of 2 in the Mechanistic Insights Revealed By Ybtpq in the Occluded State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Mechanistic Insights Revealed By Ybtpq in the Occluded State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg701 b:24.6 occ:1.00 OG1 B:THR385 2.1 26.4 1.0 O3G B:AOV702 2.1 26.1 1.0 OE1 B:GLN426 2.5 24.9 1.0 CB B:THR385 2.9 26.4 1.0 O1B B:AOV702 3.1 26.1 1.0 O2A B:AOV702 3.2 26.1 1.0 CG2 B:THR385 3.4 26.4 1.0 CD B:GLN426 3.7 24.9 1.0 VG B:AOV702 3.7 26.1 1.0 O3B B:AOV702 3.9 26.1 1.0 OD2 B:ASP506 4.0 28.6 1.0 PB B:AOV702 4.0 26.1 1.0 PA B:AOV702 4.2 26.1 1.0 NE2 B:GLN426 4.3 24.9 1.0 CA B:THR385 4.3 26.4 1.0 N A:GLY483 4.3 22.9 1.0 O3A B:AOV702 4.5 26.1 1.0 O4G B:AOV702 4.5 26.1 1.0 N B:THR385 4.6 26.4 1.0 O1A B:AOV702 4.6 26.1 1.0 O2G B:AOV702 4.7 26.1 1.0 OD1 B:ASP506 4.8 28.6 1.0 CG B:ASP506 4.8 28.6 1.0 CB B:GLN426 4.9 24.9 1.0 CG B:GLN426 4.9 24.9 1.0 CA A:SER482 5.0 24.6 1.0

W.Hu, C.Parkinson, H.Zheng. Mechanistic Insights Revealed By Ybtpq in the Occluded State. Biomolecules V. 14 2024.
ISSN: ESSN 2218-273X
PubMed: 38540742
DOI: 10.3390/BIOM14030322