Magnesium in PDB 8vu3: Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Enzymatic activity of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
All present enzymatic activity of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles:
1.97.1.12;
Other elements in 8vu3:
The structure of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
210;
Page 22, Binding sites: 211 -
220;
Page 23, Binding sites: 221 -
230;
Page 24, Binding sites: 231 -
240;
Page 25, Binding sites: 241 -
250;
Page 26, Binding sites: 251 -
260;
Page 27, Binding sites: 261 -
270;
Page 28, Binding sites: 271 -
280;
Page 29, Binding sites: 281 -
288;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
(pdb code 8vu3). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 288 binding sites of Magnesium where determined in the
Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles, PDB code: 8vu3:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 1 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg801
b:31.8
occ:1.00
|
MG
|
A:CL0801
|
0.0
|
31.8
|
1.0
|
ND
|
A:CL0801
|
2.0
|
33.2
|
1.0
|
NB
|
A:CL0801
|
2.0
|
30.2
|
1.0
|
NC
|
A:CL0801
|
2.1
|
25.5
|
1.0
|
NA
|
A:CL0801
|
2.2
|
30.9
|
1.0
|
NE2
|
A:HIS680
|
2.8
|
30.2
|
1.0
|
C4D
|
A:CL0801
|
2.9
|
27.4
|
1.0
|
C4B
|
A:CL0801
|
3.0
|
32.1
|
1.0
|
C1B
|
A:CL0801
|
3.0
|
30.1
|
1.0
|
C1D
|
A:CL0801
|
3.1
|
29.2
|
1.0
|
C1C
|
A:CL0801
|
3.1
|
24.7
|
1.0
|
C4A
|
A:CL0801
|
3.1
|
27.7
|
1.0
|
C4C
|
A:CL0801
|
3.2
|
29.2
|
1.0
|
C1A
|
A:CL0801
|
3.2
|
30.5
|
1.0
|
CHB
|
A:CL0801
|
3.4
|
26.4
|
1.0
|
CHC
|
A:CL0801
|
3.4
|
18.2
|
1.0
|
CE1
|
A:HIS680
|
3.5
|
21.2
|
1.0
|
CHA
|
A:CL0801
|
3.5
|
28.6
|
1.0
|
CHD
|
A:CL0801
|
3.5
|
25.5
|
1.0
|
CHC
|
B:CLA802
|
3.7
|
32.0
|
1.0
|
C4B
|
B:CLA802
|
3.7
|
29.6
|
1.0
|
CAB
|
B:CLA802
|
3.7
|
30.0
|
1.0
|
C3B
|
B:CLA802
|
3.7
|
24.4
|
1.0
|
CD2
|
A:HIS680
|
3.9
|
34.0
|
1.0
|
C3D
|
A:CL0801
|
4.2
|
29.2
|
1.0
|
C3B
|
A:CL0801
|
4.3
|
31.3
|
1.0
|
C2D
|
A:CL0801
|
4.3
|
30.3
|
1.0
|
C2B
|
A:CL0801
|
4.4
|
23.7
|
1.0
|
NB
|
B:CLA802
|
4.4
|
27.8
|
1.0
|
C3A
|
A:CL0801
|
4.4
|
23.7
|
1.0
|
C3C
|
A:CL0801
|
4.4
|
30.3
|
1.0
|
C2C
|
A:CL0801
|
4.4
|
27.7
|
1.0
|
C1C
|
B:CLA802
|
4.5
|
30.5
|
1.0
|
C2B
|
B:CLA802
|
4.5
|
24.7
|
1.0
|
C2A
|
A:CL0801
|
4.5
|
24.5
|
1.0
|
ND1
|
A:HIS680
|
4.7
|
24.3
|
1.0
|
C1B
|
B:CLA802
|
4.8
|
22.6
|
1.0
|
CBB
|
B:CLA802
|
4.8
|
30.4
|
1.0
|
CG
|
A:HIS680
|
5.0
|
27.9
|
1.0
|
|
Magnesium binding site 2 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 2 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg802
b:44.2
occ:1.00
|
MG
|
A:CLA802
|
0.0
|
44.2
|
1.0
|
ND
|
A:CLA802
|
2.0
|
30.3
|
1.0
|
NB
|
A:CLA802
|
2.1
|
33.0
|
1.0
|
NC
|
A:CLA802
|
2.1
|
31.5
|
1.0
|
NA
|
A:CLA802
|
2.2
|
39.9
|
1.0
|
C4D
|
A:CLA802
|
2.9
|
29.8
|
1.0
|
SD
|
A:MET688
|
2.9
|
44.1
|
1.0
|
C1B
|
A:CLA802
|
3.0
|
32.5
|
1.0
|
C4B
|
A:CLA802
|
3.0
|
29.7
|
1.0
|
C1D
|
A:CLA802
|
3.1
|
36.9
|
1.0
|
C1C
|
A:CLA802
|
3.1
|
31.1
|
1.0
|
C4A
|
A:CLA802
|
3.1
|
35.6
|
1.0
|
C4C
|
A:CLA802
|
3.1
|
34.8
|
1.0
|
C1A
|
A:CLA802
|
3.2
|
37.1
|
1.0
|
NE1
|
B:TRP589
|
3.3
|
24.4
|
1.0
|
CHB
|
A:CLA802
|
3.4
|
36.8
|
1.0
|
CHC
|
A:CLA802
|
3.4
|
29.5
|
1.0
|
CHA
|
A:CLA802
|
3.5
|
30.6
|
1.0
|
CHD
|
A:CLA802
|
3.5
|
40.8
|
1.0
|
CE
|
A:MET688
|
3.8
|
25.5
|
1.0
|
CG
|
A:MET688
|
4.0
|
31.1
|
1.0
|
CE2
|
B:TRP589
|
4.0
|
25.6
|
1.0
|
CZ2
|
B:TRP589
|
4.0
|
24.8
|
1.0
|
C3D
|
A:CLA802
|
4.2
|
31.1
|
1.0
|
CB
|
A:MET688
|
4.3
|
28.1
|
1.0
|
C3B
|
A:CLA802
|
4.3
|
28.3
|
1.0
|
C2D
|
A:CLA802
|
4.4
|
33.4
|
1.0
|
C2B
|
A:CLA802
|
4.4
|
26.0
|
1.0
|
CD1
|
B:TRP589
|
4.4
|
20.4
|
1.0
|
C3C
|
A:CLA802
|
4.4
|
31.1
|
1.0
|
C2C
|
A:CLA802
|
4.4
|
35.5
|
1.0
|
C3A
|
A:CLA802
|
4.5
|
39.6
|
1.0
|
C2A
|
A:CLA802
|
4.5
|
39.4
|
1.0
|
CMC
|
B:CLA801
|
4.9
|
29.1
|
1.0
|
CBD
|
A:CLA802
|
5.0
|
29.4
|
1.0
|
|
Magnesium binding site 3 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 3 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg803
b:41.0
occ:1.00
|
MG
|
A:CLA803
|
0.0
|
41.0
|
1.0
|
ND
|
A:CLA803
|
2.0
|
35.6
|
1.0
|
NB
|
A:CLA803
|
2.0
|
30.7
|
1.0
|
NC
|
A:CLA803
|
2.1
|
25.5
|
1.0
|
NA
|
A:CLA803
|
2.2
|
29.0
|
1.0
|
C4D
|
A:CLA803
|
2.9
|
26.5
|
1.0
|
C4B
|
A:CLA803
|
3.0
|
25.5
|
1.0
|
C1B
|
A:CLA803
|
3.1
|
23.6
|
1.0
|
C1C
|
A:CLA803
|
3.1
|
24.3
|
1.0
|
C1D
|
A:CLA803
|
3.1
|
21.5
|
1.0
|
C4C
|
A:CLA803
|
3.2
|
24.7
|
1.0
|
CBB
|
B:CLA803
|
3.2
|
8.2
|
1.0
|
C4A
|
A:CLA803
|
3.2
|
23.4
|
1.0
|
C1A
|
A:CLA803
|
3.2
|
26.7
|
1.0
|
CHC
|
A:CLA803
|
3.4
|
22.1
|
1.0
|
CHA
|
A:CLA803
|
3.5
|
23.7
|
1.0
|
CHB
|
A:CLA803
|
3.5
|
24.7
|
1.0
|
CHD
|
A:CLA803
|
3.5
|
24.8
|
1.0
|
CAB
|
B:CLA803
|
4.0
|
23.0
|
1.0
|
C3D
|
A:CLA803
|
4.1
|
21.9
|
1.0
|
C3B
|
A:CLA803
|
4.3
|
28.2
|
1.0
|
CB
|
B:ALA665
|
4.3
|
13.4
|
1.0
|
C2D
|
A:CLA803
|
4.3
|
28.8
|
1.0
|
C2B
|
A:CLA803
|
4.4
|
21.4
|
1.0
|
C2C
|
A:CLA803
|
4.4
|
23.4
|
1.0
|
C3C
|
A:CLA803
|
4.4
|
23.0
|
1.0
|
OD1
|
A:ASN604
|
4.5
|
33.9
|
1.0
|
C3A
|
A:CLA803
|
4.5
|
24.8
|
1.0
|
C2A
|
A:CLA803
|
4.5
|
26.3
|
1.0
|
C20
|
A:CL0801
|
4.7
|
24.0
|
1.0
|
C3B
|
B:CLA803
|
4.7
|
25.3
|
1.0
|
C2
|
A:CL0801
|
4.8
|
32.4
|
1.0
|
CBD
|
A:CLA803
|
4.9
|
24.8
|
1.0
|
|
Magnesium binding site 4 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 4 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg804
b:55.7
occ:1.00
|
MG
|
A:CLA804
|
0.0
|
55.7
|
1.0
|
ND
|
A:CLA804
|
2.0
|
60.3
|
1.0
|
NB
|
A:CLA804
|
2.1
|
61.1
|
1.0
|
NC
|
A:CLA804
|
2.1
|
59.1
|
1.0
|
NA
|
A:CLA804
|
2.2
|
60.9
|
1.0
|
NE2
|
A:HIS52
|
2.8
|
53.5
|
1.0
|
C4D
|
A:CLA804
|
2.9
|
58.9
|
1.0
|
C4B
|
A:CLA804
|
3.0
|
60.7
|
1.0
|
C1B
|
A:CLA804
|
3.1
|
59.1
|
1.0
|
C1C
|
A:CLA804
|
3.1
|
60.8
|
1.0
|
C1D
|
A:CLA804
|
3.1
|
59.1
|
1.0
|
C4A
|
A:CLA804
|
3.2
|
58.8
|
1.0
|
C4C
|
A:CLA804
|
3.2
|
60.1
|
1.0
|
C1A
|
A:CLA804
|
3.2
|
61.7
|
1.0
|
CHC
|
A:CLA804
|
3.4
|
59.6
|
1.0
|
CHB
|
A:CLA804
|
3.4
|
55.2
|
1.0
|
CB
|
J:PRO14
|
3.4
|
66.4
|
1.0
|
CHA
|
A:CLA804
|
3.5
|
60.0
|
1.0
|
CHD
|
A:CLA804
|
3.6
|
57.8
|
1.0
|
CG
|
J:PRO14
|
3.6
|
65.8
|
1.0
|
CE1
|
A:HIS52
|
3.7
|
52.9
|
1.0
|
CD2
|
A:HIS52
|
3.7
|
50.0
|
1.0
|
C3D
|
A:CLA804
|
4.1
|
56.2
|
1.0
|
C3B
|
A:CLA804
|
4.3
|
62.7
|
1.0
|
C2D
|
A:CLA804
|
4.4
|
56.3
|
1.0
|
C2B
|
A:CLA804
|
4.4
|
61.7
|
1.0
|
C2C
|
A:CLA804
|
4.4
|
62.7
|
1.0
|
C3C
|
A:CLA804
|
4.5
|
62.3
|
1.0
|
C3A
|
A:CLA804
|
4.5
|
61.2
|
1.0
|
CD
|
J:PRO14
|
4.5
|
63.8
|
1.0
|
C2A
|
A:CLA804
|
4.5
|
59.5
|
1.0
|
C29
|
J:BCR103
|
4.8
|
67.6
|
1.0
|
ND1
|
A:HIS52
|
4.8
|
53.0
|
1.0
|
CA
|
J:PRO14
|
4.9
|
69.0
|
1.0
|
CG
|
A:HIS52
|
4.9
|
50.9
|
1.0
|
CBD
|
A:CLA804
|
5.0
|
58.5
|
1.0
|
|
Magnesium binding site 5 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 5 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg805
b:64.2
occ:1.00
|
MG
|
A:CLA805
|
0.0
|
64.2
|
1.0
|
ND
|
A:CLA805
|
2.0
|
60.9
|
1.0
|
NB
|
A:CLA805
|
2.1
|
59.4
|
1.0
|
NC
|
A:CLA805
|
2.1
|
60.1
|
1.0
|
NA
|
A:CLA805
|
2.2
|
61.6
|
1.0
|
NE2
|
A:HIS56
|
2.7
|
53.4
|
1.0
|
C4D
|
A:CLA805
|
2.9
|
59.9
|
1.0
|
C4B
|
A:CLA805
|
3.0
|
57.8
|
1.0
|
C1B
|
A:CLA805
|
3.1
|
60.6
|
1.0
|
C1C
|
A:CLA805
|
3.1
|
59.2
|
1.0
|
C1D
|
A:CLA805
|
3.1
|
58.1
|
1.0
|
C4A
|
A:CLA805
|
3.1
|
61.6
|
1.0
|
C4C
|
A:CLA805
|
3.2
|
59.4
|
1.0
|
C1A
|
A:CLA805
|
3.2
|
56.3
|
1.0
|
CHC
|
A:CLA805
|
3.4
|
57.9
|
1.0
|
CHB
|
A:CLA805
|
3.4
|
61.3
|
1.0
|
CHA
|
A:CLA805
|
3.5
|
55.6
|
1.0
|
CHD
|
A:CLA805
|
3.6
|
58.3
|
1.0
|
CE1
|
A:HIS56
|
3.6
|
56.8
|
1.0
|
C7
|
A:CLA812
|
3.7
|
60.5
|
1.0
|
CD2
|
A:HIS56
|
3.7
|
52.8
|
1.0
|
C6
|
A:CLA812
|
4.1
|
60.8
|
1.0
|
C3D
|
A:CLA805
|
4.2
|
58.2
|
1.0
|
C3B
|
A:CLA805
|
4.3
|
59.8
|
1.0
|
C2D
|
A:CLA805
|
4.4
|
55.3
|
1.0
|
C2B
|
A:CLA805
|
4.4
|
60.3
|
1.0
|
C2C
|
A:CLA805
|
4.4
|
59.4
|
1.0
|
C3C
|
A:CLA805
|
4.4
|
61.0
|
1.0
|
C3A
|
A:CLA805
|
4.5
|
56.5
|
1.0
|
C2A
|
A:CLA805
|
4.5
|
55.9
|
1.0
|
C5
|
A:CLA812
|
4.7
|
61.9
|
1.0
|
C8
|
A:CLA812
|
4.7
|
63.3
|
1.0
|
ND1
|
A:HIS56
|
4.8
|
55.7
|
1.0
|
C10
|
A:CLA812
|
4.8
|
64.0
|
1.0
|
CG
|
A:HIS56
|
4.8
|
53.2
|
1.0
|
CBD
|
A:CLA805
|
5.0
|
53.6
|
1.0
|
|
Magnesium binding site 6 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 6 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg806
b:50.3
occ:1.00
|
MG
|
A:CLA806
|
0.0
|
50.3
|
1.0
|
ND
|
A:CLA806
|
2.0
|
34.6
|
1.0
|
NB
|
A:CLA806
|
2.1
|
31.2
|
1.0
|
NC
|
A:CLA806
|
2.1
|
31.6
|
1.0
|
NA
|
A:CLA806
|
2.2
|
34.1
|
1.0
|
NE2
|
A:HIS76
|
2.7
|
55.4
|
1.0
|
C4D
|
A:CLA806
|
2.9
|
32.2
|
1.0
|
C4B
|
A:CLA806
|
3.0
|
29.9
|
1.0
|
CMB
|
A:CLA831
|
3.0
|
45.6
|
1.0
|
C1B
|
A:CLA806
|
3.1
|
35.9
|
1.0
|
C1C
|
A:CLA806
|
3.1
|
35.6
|
1.0
|
C1D
|
A:CLA806
|
3.1
|
33.9
|
1.0
|
C4A
|
A:CLA806
|
3.1
|
36.9
|
1.0
|
C4C
|
A:CLA806
|
3.2
|
34.8
|
1.0
|
C1A
|
A:CLA806
|
3.2
|
36.5
|
1.0
|
CHC
|
A:CLA806
|
3.4
|
35.4
|
1.0
|
CD2
|
A:HIS76
|
3.4
|
50.0
|
1.0
|
CHB
|
A:CLA806
|
3.4
|
35.3
|
1.0
|
CHA
|
A:CLA806
|
3.5
|
32.0
|
1.0
|
CHD
|
A:CLA806
|
3.6
|
37.5
|
1.0
|
CE1
|
A:HIS76
|
3.8
|
54.7
|
1.0
|
C3D
|
A:CLA806
|
4.2
|
32.1
|
1.0
|
C3B
|
A:CLA806
|
4.3
|
35.3
|
1.0
|
C2D
|
A:CLA806
|
4.4
|
30.0
|
1.0
|
C2B
|
A:CLA806
|
4.4
|
36.2
|
1.0
|
C2C
|
A:CLA806
|
4.4
|
39.1
|
1.0
|
C3C
|
A:CLA806
|
4.4
|
36.9
|
1.0
|
C2B
|
A:CLA831
|
4.4
|
42.4
|
1.0
|
C3A
|
A:CLA806
|
4.5
|
38.5
|
1.0
|
C2A
|
A:CLA806
|
4.5
|
41.4
|
1.0
|
CBB
|
A:CLA831
|
4.6
|
40.9
|
1.0
|
CG
|
A:HIS76
|
4.6
|
50.9
|
1.0
|
ND1
|
A:HIS76
|
4.8
|
57.2
|
1.0
|
CG2
|
A:ILE72
|
4.9
|
48.6
|
1.0
|
CBD
|
A:CLA806
|
5.0
|
31.9
|
1.0
|
CD2
|
A:LEU356
|
5.0
|
36.5
|
1.0
|
|
Magnesium binding site 7 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 7 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg807
b:51.7
occ:1.00
|
MG
|
A:CLA807
|
0.0
|
51.7
|
1.0
|
ND
|
A:CLA807
|
2.0
|
46.6
|
1.0
|
NB
|
A:CLA807
|
2.1
|
46.6
|
1.0
|
NC
|
A:CLA807
|
2.1
|
48.9
|
1.0
|
NA
|
A:CLA807
|
2.2
|
48.5
|
1.0
|
NE2
|
A:HIS79
|
2.7
|
53.5
|
1.0
|
C4D
|
A:CLA807
|
2.9
|
42.0
|
1.0
|
C4B
|
A:CLA807
|
3.0
|
44.6
|
1.0
|
C1B
|
A:CLA807
|
3.1
|
47.5
|
1.0
|
C1C
|
A:CLA807
|
3.1
|
46.2
|
1.0
|
C1D
|
A:CLA807
|
3.1
|
46.7
|
1.0
|
C4A
|
A:CLA807
|
3.1
|
45.8
|
1.0
|
C4C
|
A:CLA807
|
3.2
|
46.3
|
1.0
|
C1A
|
A:CLA807
|
3.2
|
44.6
|
1.0
|
CHC
|
A:CLA807
|
3.4
|
41.4
|
1.0
|
CHB
|
A:CLA807
|
3.4
|
43.8
|
1.0
|
C16
|
A:CLA807
|
3.5
|
42.1
|
1.0
|
CHA
|
A:CLA807
|
3.5
|
41.7
|
1.0
|
CHD
|
A:CLA807
|
3.6
|
44.4
|
1.0
|
CE1
|
A:HIS79
|
3.6
|
55.6
|
1.0
|
CD2
|
A:HIS79
|
3.7
|
51.6
|
1.0
|
C3D
|
A:CLA807
|
4.1
|
46.1
|
1.0
|
C3B
|
A:CLA807
|
4.3
|
46.5
|
1.0
|
C17
|
A:CLA807
|
4.3
|
47.3
|
1.0
|
C2D
|
A:CLA807
|
4.4
|
45.2
|
1.0
|
C2B
|
A:CLA807
|
4.4
|
47.7
|
1.0
|
C2C
|
A:CLA807
|
4.4
|
49.1
|
1.0
|
C3C
|
A:CLA807
|
4.4
|
48.3
|
1.0
|
C18
|
A:CLA807
|
4.5
|
52.0
|
1.0
|
C3A
|
A:CLA807
|
4.5
|
51.2
|
1.0
|
C2A
|
A:CLA807
|
4.5
|
52.0
|
1.0
|
C14
|
A:CLA807
|
4.6
|
50.6
|
1.0
|
C19
|
A:CLA807
|
4.6
|
50.9
|
1.0
|
C15
|
A:CLA807
|
4.7
|
48.0
|
1.0
|
ND1
|
A:HIS79
|
4.8
|
50.2
|
1.0
|
C13
|
A:CLA807
|
4.8
|
52.5
|
1.0
|
CG
|
A:HIS79
|
4.8
|
51.0
|
1.0
|
CMA
|
A:CLA806
|
4.9
|
41.9
|
1.0
|
CBD
|
A:CLA807
|
5.0
|
47.7
|
1.0
|
|
Magnesium binding site 8 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 8 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg808
b:74.1
occ:1.00
|
MG
|
A:CLA808
|
0.0
|
74.1
|
1.0
|
ND
|
A:CLA808
|
2.0
|
67.1
|
1.0
|
NB
|
A:CLA808
|
2.1
|
65.2
|
1.0
|
NC
|
A:CLA808
|
2.1
|
63.6
|
1.0
|
NA
|
A:CLA808
|
2.2
|
63.5
|
1.0
|
NE2
|
A:HIS93
|
2.9
|
61.7
|
1.0
|
C4D
|
A:CLA808
|
2.9
|
62.2
|
1.0
|
C4B
|
A:CLA808
|
3.0
|
65.2
|
1.0
|
C1C
|
A:CLA808
|
3.1
|
65.5
|
1.0
|
C1B
|
A:CLA808
|
3.1
|
62.9
|
1.0
|
C1D
|
A:CLA808
|
3.1
|
64.6
|
1.0
|
C4A
|
A:CLA808
|
3.2
|
63.0
|
1.0
|
C4C
|
A:CLA808
|
3.2
|
62.5
|
1.0
|
C1A
|
A:CLA808
|
3.2
|
60.9
|
1.0
|
CHC
|
A:CLA808
|
3.4
|
66.5
|
1.0
|
CHB
|
A:CLA808
|
3.5
|
63.8
|
1.0
|
CHA
|
A:CLA808
|
3.5
|
63.1
|
1.0
|
CHD
|
A:CLA808
|
3.6
|
62.8
|
1.0
|
CD2
|
A:HIS93
|
3.8
|
61.1
|
1.0
|
CE1
|
A:HIS93
|
3.9
|
64.4
|
1.0
|
C3D
|
A:CLA808
|
4.2
|
62.3
|
1.0
|
C3B
|
A:CLA808
|
4.3
|
63.1
|
1.0
|
C2D
|
A:CLA808
|
4.4
|
64.3
|
1.0
|
C2B
|
A:CLA808
|
4.4
|
61.4
|
1.0
|
C2C
|
A:CLA808
|
4.4
|
66.4
|
1.0
|
C3C
|
A:CLA808
|
4.5
|
64.0
|
1.0
|
C3A
|
A:CLA808
|
4.5
|
62.5
|
1.0
|
C2A
|
A:CLA808
|
4.5
|
60.5
|
1.0
|
CBD
|
A:CLA808
|
5.0
|
63.6
|
1.0
|
ND1
|
A:HIS93
|
5.0
|
63.7
|
1.0
|
|
Magnesium binding site 9 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 9 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg809
b:56.0
occ:1.00
|
MG
|
A:CLA809
|
0.0
|
56.0
|
1.0
|
ND
|
A:CLA809
|
2.0
|
53.1
|
1.0
|
NB
|
A:CLA809
|
2.1
|
51.5
|
1.0
|
NC
|
A:CLA809
|
2.1
|
55.4
|
1.0
|
NA
|
A:CLA809
|
2.2
|
55.1
|
1.0
|
OE1
|
A:GLN115
|
2.7
|
58.9
|
1.0
|
C4D
|
A:CLA809
|
2.9
|
52.8
|
1.0
|
C4B
|
A:CLA809
|
3.0
|
52.7
|
1.0
|
C1C
|
A:CLA809
|
3.1
|
57.3
|
1.0
|
C1B
|
A:CLA809
|
3.1
|
50.9
|
1.0
|
C1D
|
A:CLA809
|
3.1
|
53.6
|
1.0
|
C4A
|
A:CLA809
|
3.1
|
52.3
|
1.0
|
C1A
|
A:CLA809
|
3.2
|
55.4
|
1.0
|
C4C
|
A:CLA809
|
3.2
|
50.3
|
1.0
|
CHC
|
A:CLA809
|
3.3
|
56.9
|
1.0
|
CHB
|
A:CLA809
|
3.4
|
51.5
|
1.0
|
CD
|
A:GLN115
|
3.5
|
56.8
|
1.0
|
CHA
|
A:CLA809
|
3.5
|
52.9
|
1.0
|
CHD
|
A:CLA809
|
3.6
|
49.8
|
1.0
|
NE2
|
A:GLN115
|
3.7
|
55.5
|
1.0
|
C6
|
A:CLA829
|
3.7
|
50.0
|
1.0
|
C4
|
A:CLA829
|
3.7
|
47.7
|
1.0
|
C3D
|
A:CLA809
|
4.2
|
51.4
|
1.0
|
C3B
|
A:CLA809
|
4.3
|
52.0
|
1.0
|
C2D
|
A:CLA809
|
4.4
|
54.2
|
1.0
|
C2B
|
A:CLA809
|
4.4
|
51.9
|
1.0
|
C2C
|
A:CLA809
|
4.4
|
53.9
|
1.0
|
C3C
|
A:CLA809
|
4.4
|
54.6
|
1.0
|
C2A
|
A:CLA809
|
4.5
|
52.3
|
1.0
|
C3A
|
A:CLA809
|
4.5
|
53.1
|
1.0
|
C3
|
A:CLA829
|
4.6
|
52.7
|
1.0
|
CG
|
A:GLN115
|
4.7
|
58.8
|
1.0
|
C7
|
A:CLA829
|
4.7
|
51.2
|
1.0
|
C5
|
A:CLA829
|
4.7
|
54.1
|
1.0
|
O1A
|
A:CLA829
|
4.8
|
59.5
|
1.0
|
CAA
|
A:CLA809
|
5.0
|
58.8
|
1.0
|
CBD
|
A:CLA809
|
5.0
|
55.1
|
1.0
|
|
Magnesium binding site 10 out
of 288 in 8vu3
Go back to
Magnesium Binding Sites List in 8vu3
Magnesium binding site 10 out
of 288 in the Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Cyanobacterial Psi with Bound Platinum Nanoparticles within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg810
b:54.6
occ:1.00
|
MG
|
A:CLA810
|
0.0
|
54.6
|
1.0
|
ND
|
A:CLA810
|
2.0
|
54.6
|
1.0
|
NB
|
A:CLA810
|
2.1
|
57.8
|
1.0
|
NC
|
A:CLA810
|
2.1
|
54.2
|
1.0
|
NA
|
A:CLA810
|
2.2
|
57.3
|
1.0
|
OE1
|
A:GLN123
|
2.6
|
64.3
|
1.0
|
C4D
|
A:CLA810
|
2.9
|
55.8
|
1.0
|
C4B
|
A:CLA810
|
3.0
|
54.6
|
1.0
|
C1B
|
A:CLA810
|
3.1
|
58.6
|
1.0
|
C1C
|
A:CLA810
|
3.1
|
55.0
|
1.0
|
C1D
|
A:CLA810
|
3.1
|
55.9
|
1.0
|
C4A
|
A:CLA810
|
3.2
|
58.9
|
1.0
|
C4C
|
A:CLA810
|
3.2
|
56.9
|
1.0
|
C1A
|
A:CLA810
|
3.2
|
55.4
|
1.0
|
CHC
|
A:CLA810
|
3.4
|
56.2
|
1.0
|
CHB
|
A:CLA810
|
3.4
|
57.3
|
1.0
|
CHA
|
A:CLA810
|
3.5
|
56.2
|
1.0
|
C19
|
A:CLA829
|
3.6
|
52.3
|
1.0
|
CHD
|
A:CLA810
|
3.6
|
57.7
|
1.0
|
CD
|
A:GLN123
|
3.6
|
63.4
|
1.0
|
C18
|
A:CLA829
|
4.1
|
51.8
|
1.0
|
C3D
|
A:CLA810
|
4.2
|
56.6
|
1.0
|
C3B
|
A:CLA810
|
4.3
|
57.7
|
1.0
|
C2D
|
A:CLA810
|
4.4
|
55.6
|
1.0
|
C2B
|
A:CLA810
|
4.4
|
59.0
|
1.0
|
CG
|
A:GLN123
|
4.4
|
63.5
|
1.0
|
C2C
|
A:CLA810
|
4.4
|
55.3
|
1.0
|
C3C
|
A:CLA810
|
4.4
|
56.0
|
1.0
|
NE2
|
A:GLN123
|
4.5
|
64.8
|
1.0
|
C3A
|
A:CLA810
|
4.5
|
61.4
|
1.0
|
C2A
|
A:CLA810
|
4.5
|
59.3
|
1.0
|
CBB
|
A:CLA809
|
4.8
|
57.8
|
1.0
|
C20
|
A:CLA829
|
4.9
|
52.3
|
1.0
|
CBD
|
A:CLA810
|
5.0
|
59.5
|
1.0
|
|
Reference:
C.J.Gisriel,
T.Malavath,
G.W.Brudvig,
L.M.Utschig.
The Cryo-Em Structure of A Biohybrid Photosystem I Photocatalyst Reveals the Locations of Bound Platinum Nanoparticles To Be Published.
Page generated: Wed Nov 13 12:05:41 2024
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