Magnesium in PDB 8vw0: Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound)

Enzymatic activity of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound)

All present enzymatic activity of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound):
6.3.2.9;

Protein crystallography data

The structure of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound), PDB code: 8vw0 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.63 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.136, 68.824, 100.576, 90, 90, 90
R / Rfree (%) 16.1 / 19.8

Other elements in 8vw0:

The structure of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound) also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound) (pdb code 8vw0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound), PDB code: 8vw0:

Magnesium binding site 1 out of 1 in 8vw0

Go back to Magnesium Binding Sites List in 8vw0
Magnesium binding site 1 out of 1 in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:46.9
occ:1.00
 O A:HOH738 2.2 38.9 1.0
O A:HOH611 2.2 30.6 1.0
O A:HOH864 2.3 43.5 1.0
O A:ASP214 4.2 24.4 1.0
OD1 A:ASP214 4.5 27.8 1.0
CA A:ASP214 4.6 20.2 1.0
C A:ASP214 4.8 22.3 1.0
CB A:ASP214 4.9 22.3 1.0

Reference:

S.Seibold, S.Lovell, L.Liu, K.P.Battaile. Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound) To Be Published.
Page generated: Fri Oct 4 22:15:16 2024

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