Magnesium in PDB 8vw0: Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound)

Enzymatic activity of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound)

All present enzymatic activity of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound):
6.3.2.9;

Protein crystallography data

The structure of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound), PDB code: 8vw0 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.63 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.136, 68.824, 100.576, 90, 90, 90
R / Rfree (%) 16.1 / 19.8

Other elements in 8vw0:

The structure of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound) also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound) (pdb code 8vw0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound), PDB code: 8vw0:

Magnesium binding site 1 out of 1 in 8vw0

Go back to Magnesium Binding Sites List in 8vw0
Magnesium binding site 1 out of 1 in the Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:46.9
occ:1.00
 O A:HOH738 2.2 38.9 1.0
O A:HOH611 2.2 30.6 1.0
O A:HOH864 2.3 43.5 1.0
O A:ASP214 4.2 24.4 1.0
OD1 A:ASP214 4.5 27.8 1.0
CA A:ASP214 4.6 20.2 1.0
C A:ASP214 4.8 22.3 1.0
CB A:ASP214 4.9 22.3 1.0

Reference:

S.Seibold, S.Lovell, L.Liu, K.P.Battaile. Crystal Structure of Apo Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From E. Coli (Amp Bound) To Be Published.
Page generated: Fri Oct 4 22:15:16 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy