Magnesium in PDB 8vwn: Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form

The structure of Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form, PDB code: 8vwn was solved by M.Lee, A.T.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.65 / 4.25
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	194.27, 155.309, 50.916, 90, 95.88, 90
R / Rfree (%)	22.1 / 26.9

The binding sites of Magnesium atom in the Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form (pdb code 8vwn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form, PDB code: 8vwn:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:138.6 occ:1.00 O A:HOH401 2.2 139.6 1.0 O A:HOH406 2.2 138.8 1.0 O A:HOH403 2.2 121.2 1.0 O A:HOH404 2.2 139.8 1.0 O A:HOH405 2.2 154.0 1.0 O A:HOH402 2.2 136.6 1.0 OD2 A:ASP239 3.9 146.0 1.0 OD1 A:ASP239 4.4 155.9 1.0 CG A:ASP239 4.4 150.8 1.0 OE1 A:GLN231 4.7 142.9 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:111.7 occ:1.00 O B:HOH406 2.2 142.0 1.0 O B:HOH404 2.2 129.8 1.0 O B:HOH405 2.2 145.4 1.0 O B:HOH401 2.2 132.6 1.0 O B:HOH402 2.2 130.2 1.0 O B:HOH403 2.2 132.6 1.0 NE2 B:GLN231 4.4 140.9 1.0 CB B:ASP239 4.4 153.3 1.0 O B:GLU210 4.6 143.5 1.0 N B:ASP239 4.7 145.9 1.0 CB B:ASN211 4.8 133.0 1.0 CD1 B:ILE238 4.8 146.0 1.0 CB B:ILE238 4.9 136.6 1.0 O B:LEU209 4.9 133.5 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Vibrio Cholerae Nfeob in the Gdp-Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg302 b:128.6 occ:1.00 O D:HOH404 2.2 133.1 1.0 O D:HOH403 2.2 151.8 1.0 O D:HOH406 2.2 141.8 1.0 O D:HOH402 2.2 138.2 1.0 O D:HOH405 2.2 148.7 1.0 O D:HOH401 2.2 142.6 1.0 OD1 D:ASP237 3.6 152.1 1.0 OD1 D:ASP239 4.2 146.1 1.0 N D:ILE238 4.5 149.0 1.0 CB D:ILE238 4.5 143.1 1.0 OD2 D:ASP239 4.5 152.1 1.0 CG D:ASP239 4.6 149.6 1.0 CG D:ASP237 4.8 149.2 1.0 N D:ASP239 4.9 146.1 1.0 CG1 D:ILE238 5.0 143.7 1.0

M.Lee, K.Magante, C.Gomez-Garzon, S.M.Payne, A.T.Smith. Structural Determinants of Vibrio Cholerae Feob Nucleotide Promiscuity. J.Biol.Chem. V. 300 07663 2024.
ISSN: ESSN 1083-351X
PubMed: 39128725
DOI: 10.1016/J.JBC.2024.107663