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Magnesium in PDB 8vza: Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp
Enzymatic activity of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp
All present enzymatic activity of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp:
4.1.1.8;
4.1.1.8;
Protein crystallography data
The structure of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp, PDB code: 8vza
was solved by
P.Gade,
Y.Kim,
M.Endres,
S.Lee,
Y.Yoshikuni,
R.Gonzalez,
K.Michalska,
A.Joachimiak,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 49.52 / 2.05 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 69.409, 102.679, 104.344, 114.1, 96.74, 105.23 |
| R / Rfree (%) | 20.7 / 24.3 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp
(pdb code 8vza). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp, PDB code: 8vza:
Jump to Magnesium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Magnesium where determined in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp, PDB code: 8vza:
Jump to Magnesium binding site number: 1; 2; 3; 4;
Magnesium binding site 1 out of 4 in 8vza
Go back to
Magnesium Binding Sites List in 8vza
Magnesium binding site 1 out
of 4 in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp within 5.0Å range:
|
Magnesium binding site 2 out of 4 in 8vza
Go back to
Magnesium Binding Sites List in 8vza
Magnesium binding site 2 out
of 4 in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp within 5.0Å range:
|
Magnesium binding site 3 out of 4 in 8vza
Go back to
Magnesium Binding Sites List in 8vza
Magnesium binding site 3 out
of 4 in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp within 5.0Å range:
|
Magnesium binding site 4 out of 4 in 8vza
Go back to
Magnesium Binding Sites List in 8vza
Magnesium binding site 4 out
of 4 in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, L-Lactyl-Coa, and Adp within 5.0Å range:
|
Reference:
Y.Kim,
S.H.Lee,
P.Gade,
M.Nattermann,
N.Maltseva,
M.Endres,
J.Chen,
P.Wichmann,
Y.Hu,
D.G.Marchal,
Y.Yoshikuni,
T.J.Erb,
R.Gonzalez,
K.Michalska,
A.Joachimiak.
Revealing Reaction Intermediates in One-Carbon Elongation By Thiamine Diphosphate/Coa-Dependent Enzyme Family. Commun Chem V. 7 160 2024.
ISSN: ESSN 2399-3669
PubMed: 39034323
DOI: 10.1038/S42004-024-01242-Y
Page generated: Thu Oct 31 22:16:27 2024
ISSN: ESSN 2399-3669
PubMed: 39034323
DOI: 10.1038/S42004-024-01242-Y
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