Magnesium »
PDB 8vmz-8vzi »
8vzb »
Magnesium in PDB 8vzb: Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp
Enzymatic activity of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp
All present enzymatic activity of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp:
4.1.1.8;
4.1.1.8;
Protein crystallography data
The structure of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp, PDB code: 8vzb
was solved by
P.Gade,
Y.Kim,
M.Endres,
S.Lee,
Y.Yoshikuni,
R.Gonzalez,
K.Michalska,
A.Joachimiak,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.27 / 1.98 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 69.709, 178.005, 196.111, 90, 90, 90 |
| R / Rfree (%) | 17.9 / 21.8 |
Other elements in 8vzb:
The structure of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp also contains other interesting chemical elements:
| Chlorine | (Cl) | 2 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp
(pdb code 8vzb). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp, PDB code: 8vzb:
Jump to Magnesium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Magnesium where determined in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp, PDB code: 8vzb:
Jump to Magnesium binding site number: 1; 2; 3; 4;
Magnesium binding site 1 out of 4 in 8vzb
Go back to
Magnesium Binding Sites List in 8vzb
Magnesium binding site 1 out
of 4 in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp within 5.0Å range:
|
Magnesium binding site 2 out of 4 in 8vzb
Go back to
Magnesium Binding Sites List in 8vzb
Magnesium binding site 2 out
of 4 in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp within 5.0Å range:
|
Magnesium binding site 3 out of 4 in 8vzb
Go back to
Magnesium Binding Sites List in 8vzb
Magnesium binding site 3 out
of 4 in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp within 5.0Å range:
|
Magnesium binding site 4 out of 4 in 8vzb
Go back to
Magnesium Binding Sites List in 8vzb
Magnesium binding site 4 out
of 4 in the Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of 2-Hydroxacyl-Coa Lyase/Synthase Apbhacs From Alphaproteobacteria Bacterium in the Complex with Thdp, D-Lactyl-Coa, and Adp within 5.0Å range:
|
Reference:
Y.Kim,
S.H.Lee,
P.Gade,
M.Nattermann,
N.Maltseva,
M.Endres,
J.Chen,
P.Wichmann,
Y.Hu,
D.G.Marchal,
Y.Yoshikuni,
T.J.Erb,
R.Gonzalez,
K.Michalska,
A.Joachimiak.
Revealing Reaction Intermediates in One-Carbon Elongation By Thiamine Diphosphate/Coa-Dependent Enzyme Family. Commun Chem V. 7 160 2024.
ISSN: ESSN 2399-3669
PubMed: 39034323
DOI: 10.1038/S42004-024-01242-Y
Page generated: Thu Oct 31 22:16:20 2024
ISSN: ESSN 2399-3669
PubMed: 39034323
DOI: 10.1038/S42004-024-01242-Y
Last articles
Zn in 9JPJZn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
