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Magnesium in PDB 8w21: Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)

Enzymatic activity of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)

All present enzymatic activity of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form):
4.2.1.11;

Protein crystallography data

The structure of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form), PDB code: 8w21 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.35 / 2.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 140.602, 140.602, 409.05, 90, 90, 90
R / Rfree (%) 17.5 / 22.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) (pdb code 8w21). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form), PDB code: 8w21:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 8w21

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Magnesium binding site 1 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:43.2
occ:1.00
 OD2 A:ASP310 2.2 38.5 1.0
O A:HOH615 2.4 36.1 1.0
OE2 A:GLU283 2.4 31.5 1.0
OD2 A:ASP244 2.6 37.9 1.0
CG A:ASP310 3.3 37.1 1.0
O A:HOH622 3.3 39.2 1.0
CD A:GLU283 3.5 36.4 1.0
CG A:ASP244 3.5 35.7 1.0
CB A:ASP310 3.8 39.2 1.0
OD1 A:ASP244 3.8 33.7 1.0
NZ A:LYS335 3.9 37.7 1.0
NZ A:LYS386 4.0 38.1 1.0
O A:HOH688 4.2 50.4 1.0
OE1 A:GLU283 4.3 40.3 1.0
OD1 A:ASP310 4.3 37.8 1.0
OD2 A:ASP284 4.4 31.6 1.0
OE2 A:GLU166 4.4 51.5 1.0
CG A:GLU283 4.5 34.1 1.0
NE2 A:GLN165 4.5 43.4 1.0
CD2 A:LEU333 4.6 36.3 1.0
O1 A:PO4501 4.7 52.3 1.0
CB A:ASP244 4.8 35.6 1.0
CE A:LYS386 4.9 37.4 1.0
CE A:LYS335 5.0 27.9 1.0

Magnesium binding site 2 out of 7 in 8w21

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Magnesium binding site 2 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:59.8
occ:1.00
 OD2 B:ASP310 2.2 56.1 1.0
OE2 B:GLU283 2.4 49.1 1.0
O B:HOH671 2.4 45.9 1.0
OD2 B:ASP244 2.9 44.9 1.0
CG B:ASP310 3.3 53.5 1.0
CD B:GLU283 3.6 45.1 1.0
CG B:ASP244 3.8 40.6 1.0
CB B:ASP310 3.9 49.9 1.0
NZ B:LYS386 4.1 42.2 1.0
OD1 B:ASP244 4.1 34.9 1.0
NZ B:LYS335 4.1 41.2 1.0
OE1 B:GLU283 4.3 40.4 1.0
OE2 B:GLU166 4.3 60.1 1.0
OD1 B:ASP310 4.3 48.0 1.0
OD2 B:ASP284 4.4 51.7 1.0
CD2 B:LEU333 4.5 40.3 1.0
CG B:GLU283 4.6 38.5 1.0
OE1 B:GLN165 4.7 47.9 1.0
CE B:LYS386 5.0 45.9 1.0

Magnesium binding site 3 out of 7 in 8w21

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Magnesium binding site 3 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg504

b:47.2
occ:1.00
 OD1 C:ASP244 2.6 37.7 1.0
OD2 C:ASP284 2.9 38.2 1.0
OD2 C:ASP244 2.9 41.8 1.0
OD2 C:ASP310 3.1 55.4 1.0
OE2 C:GLU283 3.1 44.2 1.0
CG C:ASP244 3.2 38.5 1.0
O C:HOH669 3.5 49.6 1.0
CG C:ASP284 3.7 38.9 1.0
CA C:ALA246 3.7 37.4 1.0
CB C:ALA246 3.8 37.6 1.0
CB C:ASP284 3.8 34.0 1.0
CD C:GLU283 4.0 46.2 1.0
O C:HOH635 4.0 35.3 1.0
CG C:ASP310 4.0 48.6 1.0
OD2 C:ASP311 4.1 54.9 1.0
N C:ALA246 4.1 37.1 1.0
CB C:ASP310 4.1 47.4 1.0
CG C:GLU283 4.2 34.7 1.0
O C:HOH664 4.6 39.8 1.0
OE1 C:GLN165 4.6 46.5 1.0
CG C:ASP311 4.7 50.4 1.0
CB C:ASP244 4.7 34.9 1.0
OD1 C:ASP284 4.9 33.9 1.0
OE1 C:GLU283 5.0 46.5 1.0

Magnesium binding site 4 out of 7 in 8w21

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Magnesium binding site 4 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg504

b:61.2
occ:1.00
 OD2 D:ASP310 2.7 47.7 1.0
OD2 D:ASP244 2.9 38.2 1.0
O D:HOH630 2.9 38.6 1.0
OE2 D:GLU283 3.1 41.6 1.0
NZ D:LYS386 3.6 45.4 1.0
CG D:ASP310 3.7 51.3 1.0
OE2 D:GLU166 3.9 59.0 1.0
NZ D:LYS335 3.9 35.5 1.0
CG D:ASP244 4.0 34.6 1.0
CD D:GLU283 4.3 39.4 1.0
OD1 D:ASP310 4.4 47.6 1.0
OD1 D:ASP244 4.4 35.9 1.0
NE2 D:GLN165 4.4 41.5 1.0
CE D:LYS386 4.5 45.5 1.0
O4 D:PO4502 4.5 44.3 1.0
CD2 D:LEU333 4.5 36.6 1.0
CB D:ASP310 4.6 46.2 1.0
OE1 D:GLU283 4.8 43.8 1.0
CE D:LYS335 4.9 35.7 1.0

Magnesium binding site 5 out of 7 in 8w21

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Magnesium binding site 5 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg504

b:44.6
occ:1.00
 OE2 E:GLU283 2.2 44.8 1.0
O E:HOH627 2.4 33.1 1.0
OD2 E:ASP310 2.4 48.4 1.0
OD2 E:ASP244 2.6 42.7 1.0
CD E:GLU283 3.4 48.7 1.0
CG E:ASP244 3.4 42.6 1.0
CG E:ASP310 3.4 46.9 1.0
OD1 E:ASP244 3.5 38.5 1.0
CB E:ASP310 3.8 47.7 1.0
NZ E:LYS386 3.9 45.6 1.0
OD2 E:ASP284 4.3 44.9 1.0
CG E:GLU283 4.3 41.5 1.0
OE1 E:GLU283 4.3 46.6 1.0
NZ E:LYS335 4.3 40.1 1.0
CD2 E:LEU333 4.5 33.0 1.0
OD1 E:ASP310 4.5 48.9 1.0
OE2 E:GLU166 4.7 59.0 1.0
CB E:ASP244 4.8 45.0 1.0
O E:HOH605 4.9 46.5 1.0
OE1 E:GLN165 5.0 44.6 1.0
CE E:LYS386 5.0 45.3 1.0

Magnesium binding site 6 out of 7 in 8w21

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Magnesium binding site 6 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg504

b:50.4
occ:1.00
 OD2 G:ASP284 2.8 39.4 1.0
OD1 G:ASP244 2.9 42.1 1.0
OD2 G:ASP244 3.0 46.7 1.0
OD2 G:ASP310 3.1 49.8 1.0
OE2 G:GLU283 3.2 43.2 1.0
CG G:ASP244 3.3 42.2 1.0
O G:HOH671 3.5 50.3 1.0
CG G:ASP284 3.7 39.4 1.0
O G:HOH653 3.7 41.3 1.0
CG G:ASP310 3.9 45.6 1.0
CB G:ASP284 4.0 37.7 1.0
CB G:ASP310 4.0 44.5 1.0
CA G:ALA246 4.1 33.3 1.0
CD G:GLU283 4.1 39.5 1.0
CB G:ALA246 4.1 33.3 1.0
OD2 G:ASP311 4.1 54.2 1.0
CG G:GLU283 4.3 38.7 1.0
N G:ALA246 4.4 30.8 1.0
CG G:ASP311 4.5 51.8 1.0
OD1 G:ASP311 4.6 49.8 1.0
OE1 G:GLN165 4.7 46.7 1.0
OD1 G:ASP284 4.8 38.1 1.0
CB G:ASP244 4.8 43.5 1.0
N G:ASP311 4.9 42.9 1.0

Magnesium binding site 7 out of 7 in 8w21

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Magnesium binding site 7 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg504

b:67.0
occ:1.00
 O H:HOH663 2.2 55.8 1.0
OD2 H:ASP244 2.7 48.5 1.0
OD2 H:ASP310 2.7 60.8 1.0
OE2 H:GLU283 3.1 51.1 1.0
O H:HOH620 3.1 47.4 1.0
NZ H:LYS386 3.5 39.3 1.0
OE2 H:GLU166 3.6 53.3 1.0
CG H:ASP244 3.8 43.7 1.0
CG H:ASP310 3.9 59.7 1.0
O H:HOH610 3.9 50.9 1.0
CD H:GLU283 4.1 50.0 1.0
OE1 H:GLN165 4.2 45.8 1.0
OD1 H:ASP244 4.3 37.6 1.0
NZ H:LYS335 4.3 47.5 1.0
CE H:LYS386 4.5 45.4 1.0
OE1 H:GLU283 4.6 42.6 1.0
CB H:ASP310 4.7 53.0 1.0
OD1 H:ASP310 4.7 53.0 1.0
O1 H:PO4502 4.7 46.6 1.0
CD H:GLU166 4.8 53.5 1.0
CD2 H:LEU333 4.8 45.9 1.0
CB H:ASP244 4.9 43.3 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile, A.Cooper, A.P.Cutter. Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) To Be Published.
Page generated: Fri Oct 4 22:16:59 2024

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