Magnesium in PDB 8w6q: Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 0 Min

The structure of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 0 Min, PDB code: 8w6q was solved by W.M.Wang, H.F.Xi, W.J.Gong, D.Y.Ma, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.95 / 2.10
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	179.814, 179.814, 179.814, 90, 90, 90
R / Rfree (%)	17.9 / 22.5

The structure of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 0 Min also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Iron	(Fe)	16 atoms

The binding sites of Magnesium atom in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 0 Min (pdb code 8w6q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 0 Min, PDB code: 8w6q:

Magnesium binding site 1 out of 1 in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 0 Min


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 0 Min within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg217 b:63.9 occ:1.00 O A:HOH425 1.9 73.9 1.0 O A:HOH318 2.0 48.6 1.0 O A:HOH383 2.0 60.8 1.0 O A:HOH316 2.2 49.5 1.0 OD1 A:ASP124 4.2 47.0 1.0 OD2 A:ASP124 4.3 50.6 1.0 O A:HOH418 4.4 50.2 1.0 O A:HOH346 4.5 46.8 1.0 O A:HOH409 4.5 48.8 1.0 CG A:ASP124 4.6 47.2 1.0 O A:LEU121 4.8 46.7 1.0

W.Wang, H.Xi, D.Fu, D.Ma, W.Gong, Y.Zhao, X.Li, L.Wu, Y.Guo, G.Zhao, H.Wang. Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized By Protein Nanocages. J.Am.Chem.Soc. V. 146 11657 2024.
ISSN: ESSN 1520-5126
PubMed: 38641862
DOI: 10.1021/JACS.3C13830