Magnesium in PDB 8w6s: Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 2 Min

The structure of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 2 Min, PDB code: 8w6s was solved by W.M.Wang, H.F.Xi, W.J.Gong, D.Y.Ma, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.94 / 2.10
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	179.765, 179.765, 179.765, 90, 90, 90
R / Rfree (%)	17.8 / 21.1

The structure of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 2 Min also contains other interesting chemical elements:

Iron	(Fe)	13 atoms
Chlorine	(Cl)	1 atom

The binding sites of Magnesium atom in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 2 Min (pdb code 8w6s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 2 Min, PDB code: 8w6s:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 2 Min


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 2 Min within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg214 b:64.3 occ:1.00 O A:HOH422 2.0 73.5 1.0 O A:HOH386 2.0 66.2 1.0 O A:HOH306 2.1 53.2 1.0 O A:HOH319 2.3 49.0 1.0 O A:HOH402 4.2 50.6 1.0 OD2 A:ASP124 4.3 46.2 1.0 OD1 A:ASP124 4.4 46.9 1.0 O A:HOH418 4.5 59.6 1.0 O A:HOH336 4.5 50.5 1.0 CG A:ASP124 4.8 44.6 1.0 O A:LEU121 4.8 45.1 1.0

Magnesium binding site 2 out of 2 in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 2 Min


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 2 Min within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg215 b:71.1 occ:1.00 O A:HOH424 2.1 67.7 1.0 O A:HOH392 2.1 75.9 1.0 O A:HOH334 2.2 63.0 1.0 O A:HOH414 2.2 69.5 1.0 O A:HOH314 2.3 60.6 1.0 O A:HOH411 2.6 72.8 1.0 OD1 A:ASP18 4.2 49.1 1.0 OD2 A:ASP18 4.3 56.4 1.0 CB A:ASN14 4.4 48.5 1.0 CG A:ASN14 4.7 58.5 1.0 CG A:ASP18 4.7 50.8 1.0 ND2 A:ASN14 4.9 47.4 1.0 O A:HOH399 5.0 55.0 1.0

W.Wang, H.Xi, D.Fu, D.Ma, W.Gong, Y.Zhao, X.Li, L.Wu, Y.Guo, G.Zhao, H.Wang. Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized By Protein Nanocages. J.Am.Chem.Soc. V. 146 11657 2024.
ISSN: ESSN 1520-5126
PubMed: 38641862
DOI: 10.1021/JACS.3C13830