Magnesium in PDB 8w6u: Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 5 Min

The structure of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 5 Min, PDB code: 8w6u was solved by W.M.Wang, H.F.Xi, W.J.Gong, D.Y.Ma, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.13 / 2.10
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.521, 180.521, 180.521, 90, 90, 90
R / Rfree (%)	18.4 / 23.4

The structure of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 5 Min also contains other interesting chemical elements:

Iron	(Fe)	13 atoms
Chlorine	(Cl)	1 atom

The binding sites of Magnesium atom in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 5 Min (pdb code 8w6u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 5 Min, PDB code: 8w6u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 5 Min


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 5 Min within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg214 b:51.4 occ:1.00 O A:HOH357 2.0 54.6 1.0 O A:HOH350 2.0 41.5 1.0 O A:HOH425 2.1 56.4 1.0 O A:HOH320 2.2 45.7 1.0 O A:HOH419 4.0 49.6 1.0 O A:HOH404 4.1 48.1 1.0 O A:HOH310 4.4 42.5 1.0 OD1 A:ASP124 4.4 39.5 1.0 OD2 A:ASP124 4.5 37.9 1.0 O A:LEU121 4.7 38.0 1.0 CG A:ASP124 4.9 34.0 1.0 O A:HOH423 5.0 52.5 1.0

Magnesium binding site 2 out of 2 in the Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 5 Min


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ferritin From Ureaplasma Diversum Soaking in FE2+ Solution For 5 Min within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg215 b:62.1 occ:1.00 O A:HOH427 1.9 58.9 1.0 O A:HOH308 2.0 54.0 1.0 O A:HOH398 2.1 54.8 1.0 O A:HOH415 2.1 60.5 1.0 O A:HOH336 2.2 56.8 1.0 O A:HOH416 2.8 57.6 1.0 OD2 A:ASP18 4.1 42.5 1.0 OD1 A:ASP18 4.3 39.3 1.0 CB A:ASN14 4.4 48.3 1.0 CG A:ASP18 4.7 50.0 1.0 ND2 A:ASN14 4.7 40.5 1.0 CG A:ASN14 4.7 58.4 1.0

W.Wang, H.Xi, D.Fu, D.Ma, W.Gong, Y.Zhao, X.Li, L.Wu, Y.Guo, G.Zhao, H.Wang. Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized By Protein Nanocages. J.Am.Chem.Soc. V. 146 11657 2024.
ISSN: ESSN 1520-5126
PubMed: 38641862
DOI: 10.1021/JACS.3C13830