Magnesium in PDB 8w8o: Thermus Thermophilus Initiation Complex in the Half-Translocated State
Enzymatic activity of Thermus Thermophilus Initiation Complex in the Half-Translocated State
All present enzymatic activity of Thermus Thermophilus Initiation Complex in the Half-Translocated State:
2.7.7.6;
2.7.7.6;
Protein crystallography data
The structure of Thermus Thermophilus Initiation Complex in the Half-Translocated State, PDB code: 8w8o
was solved by
L.Li,
Y.Zhang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 39.88 / 2.51 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 183.397, 103.796, 295.035, 90, 99.19, 90 |
| R / Rfree (%) | 18.7 / 22.6 |
Other elements in 8w8o:
The structure of Thermus Thermophilus Initiation Complex in the Half-Translocated State also contains other interesting chemical elements:
| Zinc | (Zn) | 2 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Thermus Thermophilus Initiation Complex in the Half-Translocated State
(pdb code 8w8o). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Thermus Thermophilus Initiation Complex in the Half-Translocated State, PDB code: 8w8o:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;
In total 7 binding sites of Magnesium where determined in the Thermus Thermophilus Initiation Complex in the Half-Translocated State, PDB code: 8w8o:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;
Magnesium binding site 1 out of 7 in 8w8o
Go back to
Magnesium Binding Sites List in 8w8o
Magnesium binding site 1 out
of 7 in the Thermus Thermophilus Initiation Complex in the Half-Translocated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Thermus Thermophilus Initiation Complex in the Half-Translocated State within 5.0Å range:
|
Magnesium binding site 2 out of 7 in 8w8o
Go back to
Magnesium Binding Sites List in 8w8o
Magnesium binding site 2 out
of 7 in the Thermus Thermophilus Initiation Complex in the Half-Translocated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Thermus Thermophilus Initiation Complex in the Half-Translocated State within 5.0Å range:
|
Magnesium binding site 3 out of 7 in 8w8o
Go back to
Magnesium Binding Sites List in 8w8o
Magnesium binding site 3 out
of 7 in the Thermus Thermophilus Initiation Complex in the Half-Translocated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Thermus Thermophilus Initiation Complex in the Half-Translocated State within 5.0Å range:
|
Magnesium binding site 4 out of 7 in 8w8o
Go back to
Magnesium Binding Sites List in 8w8o
Magnesium binding site 4 out
of 7 in the Thermus Thermophilus Initiation Complex in the Half-Translocated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Thermus Thermophilus Initiation Complex in the Half-Translocated State within 5.0Å range:
|
Magnesium binding site 5 out of 7 in 8w8o
Go back to
Magnesium Binding Sites List in 8w8o
Magnesium binding site 5 out
of 7 in the Thermus Thermophilus Initiation Complex in the Half-Translocated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Thermus Thermophilus Initiation Complex in the Half-Translocated State within 5.0Å range:
|
Magnesium binding site 6 out of 7 in 8w8o
Go back to
Magnesium Binding Sites List in 8w8o
Magnesium binding site 6 out
of 7 in the Thermus Thermophilus Initiation Complex in the Half-Translocated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Thermus Thermophilus Initiation Complex in the Half-Translocated State within 5.0Å range:
|
Magnesium binding site 7 out of 7 in 8w8o
Go back to
Magnesium Binding Sites List in 8w8o
Magnesium binding site 7 out
of 7 in the Thermus Thermophilus Initiation Complex in the Half-Translocated State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Thermus Thermophilus Initiation Complex in the Half-Translocated State within 5.0Å range:
|
Reference:
I.C.Nova,
J.M.Craig,
A.Mazumder,
A.H.Laszlo,
I.M.Derrington,
M.T.Noakes,
H.Brinkerhoff,
S.Yang,
H.Vahedian-Movahed,
L.Li,
Y.Zhang,
J.L.Bowman,
J.R.Huang,
J.W.Mount,
R.H.Ebright,
J.H.Gundlach.
Nanopore Tweezers Show Fractional-Nucleotide Translocation in Sequence-Dependent Pausing By Rna Polymerase. Proc.Natl.Acad.Sci.Usa V. 121 17121 2024.
ISSN: ESSN 1091-6490
PubMed: 38990947
DOI: 10.1073/PNAS.2321017121
Page generated: Fri Oct 4 22:40:18 2024
ISSN: ESSN 1091-6490
PubMed: 38990947
DOI: 10.1073/PNAS.2321017121
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