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Magnesium in PDB 8wa5: Cryo-Em Structure of the Gastric Proton Pump Y799W/E936Q Mutant in K+- Occluded (K+)E2-Alf State

Other elements in 8wa5:

The structure of Cryo-Em Structure of the Gastric Proton Pump Y799W/E936Q Mutant in K+- Occluded (K+)E2-Alf State also contains other interesting chemical elements:

Aluminium (Al) 1 atom
Fluorine (F) 4 atoms
Potassium (K) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Gastric Proton Pump Y799W/E936Q Mutant in K+- Occluded (K+)E2-Alf State (pdb code 8wa5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Gastric Proton Pump Y799W/E936Q Mutant in K+- Occluded (K+)E2-Alf State, PDB code: 8wa5:

Magnesium binding site 1 out of 1 in 8wa5

Go back to Magnesium Binding Sites List in 8wa5
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Gastric Proton Pump Y799W/E936Q Mutant in K+- Occluded (K+)E2-Alf State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Gastric Proton Pump Y799W/E936Q Mutant in K+- Occluded (K+)E2-Alf State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1105

b:35.3
occ:1.00
F2 A:ALF1104 1.9 39.9 1.0
OD1 A:ASP726 2.0 37.5 1.0
O A:THR387 2.0 38.4 1.0
OD2 A:ASP385 2.2 33.2 1.0
CG A:ASP726 3.1 37.5 1.0
C A:THR387 3.2 38.4 1.0
CG A:ASP385 3.3 33.2 1.0
AL A:ALF1104 3.5 39.9 1.0
OD2 A:ASP726 3.5 37.5 1.0
F3 A:ALF1104 3.6 39.9 1.0
OD2 A:ASP730 3.8 35.9 1.0
OD1 A:ASP385 4.0 33.2 1.0
CA A:THR387 4.0 38.4 1.0
CB A:THR387 4.1 38.4 1.0
N A:GLY388 4.2 36.4 1.0
F4 A:ALF1104 4.2 39.9 1.0
N A:THR387 4.2 38.4 1.0
N A:ASP726 4.2 37.5 1.0
OG1 A:THR389 4.3 35.4 1.0
CB A:ASP726 4.3 37.5 1.0
CA A:GLY388 4.3 36.4 1.0
C A:ASP726 4.4 37.5 1.0
O A:GLY229 4.4 44.6 1.0
CB A:ASP385 4.5 33.2 1.0
CA A:ASP726 4.5 37.5 1.0
N A:THR389 4.6 35.4 1.0
O A:ASP726 4.6 37.5 1.0
N A:GLY727 4.7 39.4 1.0
C A:GLY388 4.7 36.4 1.0
CG2 A:THR387 4.8 38.4 1.0
CA A:GLY229 4.8 44.6 1.0
CG A:ASP730 5.0 35.9 1.0
CA A:GLY727 5.0 39.4 1.0

Reference:

H.V.Madapally, K.Abe, V.Dubey, H.Khandelia. Specific Protonation of Acidic Residues Confers K+ Selectivity to the Gastric Proton Pump. To Be Published.
Page generated: Fri Oct 4 22:40:44 2024

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