Magnesium in PDB 8wav: De Novo Transcribing Complex 12 (TC12), the Early Elongation Complex with Pol II Positioned 12NT Downstream of Tss

Enzymatic activity of De Novo Transcribing Complex 12 (TC12), the Early Elongation Complex with Pol II Positioned 12NT Downstream of Tss

All present enzymatic activity of De Novo Transcribing Complex 12 (TC12), the Early Elongation Complex with Pol II Positioned 12NT Downstream of Tss:
2.7.7.6; 3.6.4.12;

Other elements in 8wav:

The structure of De Novo Transcribing Complex 12 (TC12), the Early Elongation Complex with Pol II Positioned 12NT Downstream of Tss also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the De Novo Transcribing Complex 12 (TC12), the Early Elongation Complex with Pol II Positioned 12NT Downstream of Tss (pdb code 8wav). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the De Novo Transcribing Complex 12 (TC12), the Early Elongation Complex with Pol II Positioned 12NT Downstream of Tss, PDB code: 8wav:

Magnesium binding site 1 out of 1 in 8wav

Go back to Magnesium Binding Sites List in 8wav
Magnesium binding site 1 out of 1 in the De Novo Transcribing Complex 12 (TC12), the Early Elongation Complex with Pol II Positioned 12NT Downstream of Tss


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of De Novo Transcribing Complex 12 (TC12), the Early Elongation Complex with Pol II Positioned 12NT Downstream of Tss within 5.0Å range:
probe atom residue distance (Å) B Occ
o:Mg2003

b:126.1
occ:1.00
 OD1 o:ASP495 1.8 109.0 1.0
OD1 o:ASP497 1.9 104.4 1.0
OD1 o:ASP499 2.4 109.8 1.0
CG o:ASP497 2.5 104.4 1.0
OD2 o:ASP497 2.5 104.4 1.0
O3' Z:G2L12 2.9 20.0 1.0
CG o:ASP495 3.0 109.0 1.0
CG o:ASP499 3.1 109.8 1.0
CA' Z:G2L12 3.2 20.0 1.0
OD2 o:ASP499 3.2 109.8 1.0
OD2 o:ASP495 3.6 109.0 1.0
O o:ASP495 3.6 102.1 1.0
CB o:ASP497 4.0 104.4 1.0
CB o:ASP495 4.1 109.0 1.0
C3' Z:G2L12 4.2 20.0 1.0
C o:ASP495 4.3 102.1 1.0
N o:ASP497 4.4 102.7 1.0
N o:ASP495 4.5 102.1 1.0
O33 p:W0F1201 4.5 20.0 1.0
CB o:ASP499 4.5 109.8 1.0
C4' Z:G2L12 4.5 20.0 1.0
CA o:ASP495 4.5 102.1 1.0
CA o:ASP497 4.6 102.7 1.0
C o:ASP497 4.7 102.7 1.0
O o:ASP497 4.7 102.7 1.0
N o:ASP499 4.7 102.9 1.0
O29 p:W0F1201 4.8 20.0 1.0

Reference:

X.Chen, W.Liu, Q.Wang, X.Wang, Y.Ren, X.Qu, W.Li, Y.Xu. Structural Visualization of De Novo Transcription Initiation. Science.
ISSN: ESSN 1095-9203
Page generated: Fri Oct 4 22:42:45 2024

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