Magnesium in PDB 8wce: Cryo-Em Structure of A Protein-Rna Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of A Protein-Rna Complex (pdb code 8wce). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of A Protein-Rna Complex, PDB code: 8wce:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of A Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of A Protein-Rna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1201 b:4.4 occ:1.00 OD1 A:ASP963 2.3 13.0 1.0 O A:LYS959 2.3 4.4 1.0 OD1 A:ASP962 2.6 6.0 1.0 CG A:ASP962 3.4 6.0 1.0 CG A:ASP963 3.5 13.0 1.0 C A:LYS959 3.6 4.4 1.0 OD2 A:ASP962 3.6 6.0 1.0 CB A:ASP963 4.2 13.0 1.0 OP1 T:G18 4.3 21.1 1.0 CA A:LYS959 4.3 4.4 1.0 OD2 A:ASP963 4.4 13.0 1.0 CB A:LYS959 4.5 4.4 1.0 N A:LYS960 4.5 4.4 1.0 CB A:SER342 4.6 4.4 1.0 N A:ASP963 4.7 13.0 1.0 CA A:LYS960 4.7 4.4 1.0 CB A:ASP962 4.9 6.0 1.0 N A:SER342 4.9 4.4 1.0 CA A:SER342 5.0 4.4 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of A Protein-Rna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of A Protein-Rna Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg101 b:4.4 occ:1.00 OP2 G:A23 3.0 12.4 1.0 OP1 G:A22 3.1 6.8 1.0 O5' G:A22 4.0 6.8 1.0 P G:A22 4.2 6.8 1.0 P G:A23 4.4 12.4 1.0 N6 G:A24 4.4 19.5 1.0 N7 G:A24 4.4 19.5 1.0 N7 G:A23 4.9 12.4 1.0 C8 G:A23 4.9 12.4 1.0

F.Chen, C.Zhang, J.Xue, F.Wang, Z.Li. Molecular Mechanism For Target Rna Recognition and Cleavage of CAS13H. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 38661236
DOI: 10.1093/NAR/GKAE324