Magnesium in PDB 8wcl: Fcp Pentamer in Chaetoceros Gracilis

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 47;

Binding sites:

The binding sites of Magnesium atom in the Fcp Pentamer in Chaetoceros Gracilis (pdb code 8wcl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 47 binding sites of Magnesium where determined in the Fcp Pentamer in Chaetoceros Gracilis, PDB code: 8wcl:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg305 b:85.6 occ:1.00 MG 6:CLA305 0.0 85.6 1.0 NB 6:CLA305 2.0 85.6 1.0 ND 6:CLA305 2.0 85.6 1.0 NC 6:CLA305 2.1 85.6 1.0 NA 6:CLA305 2.1 85.6 1.0 C4D 6:CLA305 2.9 85.6 1.0 C1B 6:CLA305 3.0 85.6 1.0 C4A 6:CLA305 3.0 85.6 1.0 C4B 6:CLA305 3.1 85.6 1.0 C1C 6:CLA305 3.1 85.6 1.0 C4C 6:CLA305 3.1 85.6 1.0 C1A 6:CLA305 3.1 85.6 1.0 NE1 7:TRP131 3.2 78.5 1.0 C1D 6:CLA305 3.2 85.6 1.0 CHB 6:CLA305 3.4 85.6 1.0 CHC 6:CLA305 3.4 85.6 1.0 CHA 6:CLA305 3.5 85.6 1.0 CHD 6:CLA305 3.5 85.6 1.0 CD1 7:TRP131 3.7 78.5 1.0 O 6:ALA42 4.2 80.4 1.0 C3D 6:CLA305 4.3 85.6 1.0 CE2 7:TRP131 4.3 78.5 1.0 C2B 6:CLA305 4.3 85.6 1.0 C3B 6:CLA305 4.3 85.6 1.0 O2 6:A86301 4.3 86.3 1.0 C2C 6:CLA305 4.3 85.6 1.0 C2D 6:CLA305 4.4 85.6 1.0 C3C 6:CLA305 4.4 85.6 1.0 C3A 6:CLA305 4.4 85.6 1.0 C2A 6:CLA305 4.5 85.6 1.0 C19 6:A86301 4.7 86.3 1.0 CD 6:PRO43 4.8 80.5 1.0 CZ2 7:TRP131 4.9 78.5 1.0 CG 7:TRP131 4.9 78.5 1.0 CBD 6:CLA305 4.9 85.6 1.0 CBA 6:CLA305 5.0 85.6 1.0

Magnesium binding site 2 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg306 b:81.0 occ:1.00 MG 6:CLA306 0.0 81.0 1.0 NB 6:CLA306 2.0 81.0 1.0 ND 6:CLA306 2.0 81.0 1.0 NC 6:CLA306 2.1 81.0 1.0 NA 6:CLA306 2.1 81.0 1.0 C4D 6:CLA306 2.9 81.0 1.0 C1B 6:CLA306 3.0 81.0 1.0 C4A 6:CLA306 3.0 81.0 1.0 C4B 6:CLA306 3.1 81.0 1.0 C1C 6:CLA306 3.1 81.0 1.0 C4C 6:CLA306 3.1 81.0 1.0 C1A 6:CLA306 3.1 81.0 1.0 C1D 6:CLA306 3.2 81.0 1.0 OE2 6:GLU66 3.2 77.8 1.0 CHB 6:CLA306 3.4 81.0 1.0 CHC 6:CLA306 3.4 81.0 1.0 CHA 6:CLA306 3.5 81.0 1.0 CD 6:GLU66 3.5 77.8 1.0 CHD 6:CLA306 3.5 81.0 1.0 OE1 6:GLU66 3.8 77.8 1.0 NE 6:ARG172 4.1 77.9 1.0 CG 6:GLU66 4.2 77.8 1.0 C3D 6:CLA306 4.3 81.0 1.0 C2B 6:CLA306 4.3 81.0 1.0 C3B 6:CLA306 4.3 81.0 1.0 C2C 6:CLA306 4.3 81.0 1.0 C2D 6:CLA306 4.4 81.0 1.0 C3C 6:CLA306 4.4 81.0 1.0 C3A 6:CLA306 4.4 81.0 1.0 C2A 6:CLA306 4.5 81.0 1.0 O2A 6:CLA306 4.5 81.0 1.0 NH2 6:ARG172 4.6 77.9 1.0 CZ 6:ARG172 4.7 77.9 1.0 CG 6:ARG172 4.8 77.9 1.0 CD 6:ARG172 4.8 77.9 1.0 CB 6:GLU66 4.9 77.8 1.0 CBD 6:CLA306 4.9 81.0 1.0 CBA 6:CLA306 4.9 81.0 1.0

Magnesium binding site 3 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg307 b:80.7 occ:1.00 MG 6:KC2307 0.0 80.7 1.0 ND 6:KC2307 2.0 80.7 1.0 NB 6:KC2307 2.0 80.7 1.0 NC 6:KC2307 2.1 80.7 1.0 NA 6:KC2307 2.1 80.7 1.0 NE2 6:HIS69 2.7 74.9 1.0 C4D 6:KC2307 2.9 80.7 1.0 C1B 6:KC2307 3.0 80.7 1.0 C4B 6:KC2307 3.0 80.7 1.0 C1D 6:KC2307 3.0 80.7 1.0 C4C 6:KC2307 3.1 80.7 1.0 C4A 6:KC2307 3.1 80.7 1.0 C1C 6:KC2307 3.1 80.7 1.0 C1A 6:KC2307 3.1 80.7 1.0 CHB 6:KC2307 3.4 80.7 1.0 CHA 6:KC2307 3.5 80.7 1.0 CHC 6:KC2307 3.5 80.7 1.0 CHD 6:KC2307 3.5 80.7 1.0 CE1 6:HIS69 3.6 74.9 1.0 CD2 6:HIS69 3.7 74.9 1.0 C3D 6:KC2307 4.1 80.7 1.0 C2D 6:KC2307 4.2 80.7 1.0 C2B 6:KC2307 4.2 80.7 1.0 C3B 6:KC2307 4.2 80.7 1.0 C2C 6:KC2307 4.3 80.7 1.0 C3A 6:KC2307 4.3 80.7 1.0 C3C 6:KC2307 4.3 80.7 1.0 C2A 6:KC2307 4.3 80.7 1.0 ND1 6:HIS69 4.8 74.9 1.0 CG 6:HIS69 4.9 74.9 1.0 CBD 6:KC2307 4.9 80.7 1.0

Magnesium binding site 4 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg308 b:81.2 occ:1.00 MG 6:CLA308 0.0 81.2 1.0 NB 6:CLA308 2.0 81.2 1.0 ND 6:CLA308 2.0 81.2 1.0 NC 6:CLA308 2.1 81.2 1.0 NA 6:CLA308 2.1 81.2 1.0 NE2 6:HIS83 2.9 82.3 1.0 C4D 6:CLA308 2.9 81.2 1.0 C1B 6:CLA308 3.0 81.2 1.0 C4A 6:CLA308 3.0 81.2 1.0 C4B 6:CLA308 3.1 81.2 1.0 C1C 6:CLA308 3.1 81.2 1.0 C4C 6:CLA308 3.1 81.2 1.0 C1A 6:CLA308 3.2 81.2 1.0 C1D 6:CLA308 3.2 81.2 1.0 CHB 6:CLA308 3.4 81.2 1.0 CHC 6:CLA308 3.4 81.2 1.0 CHA 6:CLA308 3.5 81.2 1.0 CHD 6:CLA308 3.5 81.2 1.0 C2 6:CLA308 3.6 81.2 1.0 CE1 6:HIS83 3.7 82.3 1.0 CD2 6:HIS83 3.9 82.3 1.0 O2A 6:CLA308 4.0 81.2 1.0 C1 6:CLA308 4.0 81.2 1.0 C3 6:CLA308 4.1 81.2 1.0 C3D 6:CLA308 4.3 81.2 1.0 C2B 6:CLA308 4.3 81.2 1.0 C3B 6:CLA308 4.3 81.2 1.0 C2C 6:CLA308 4.3 81.2 1.0 C2D 6:CLA308 4.4 81.2 1.0 C3C 6:CLA308 4.4 81.2 1.0 C3A 6:CLA308 4.4 81.2 1.0 C5 6:CLA308 4.4 81.2 1.0 C2A 6:CLA308 4.5 81.2 1.0 CA 6:GLY79 4.7 80.8 1.0 C6 6:CLA308 4.7 81.2 1.0 ND1 6:HIS83 4.9 82.3 1.0 CGA 6:CLA308 4.9 81.2 1.0 CBD 6:CLA308 4.9 81.2 1.0 C4 6:CLA308 5.0 81.2 1.0 CG 6:HIS83 5.0 82.3 1.0

Magnesium binding site 5 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg309 b:85.3 occ:1.00 MG 6:KC2309 0.0 85.3 1.0 ND 6:KC2309 2.0 85.3 1.0 NB 6:KC2309 2.0 85.3 1.0 NC 6:KC2309 2.1 85.3 1.0 NA 6:KC2309 2.1 85.3 1.0 OE1 6:GLN121 2.9 84.0 1.0 C4D 6:KC2309 2.9 85.3 1.0 C1B 6:KC2309 3.0 85.3 1.0 C4B 6:KC2309 3.0 85.3 1.0 C1D 6:KC2309 3.0 85.3 1.0 C4C 6:KC2309 3.1 85.3 1.0 C4A 6:KC2309 3.1 85.3 1.0 C1C 6:KC2309 3.1 85.3 1.0 C1A 6:KC2309 3.1 85.3 1.0 CHB 6:KC2309 3.4 85.3 1.0 CHA 6:KC2309 3.5 85.3 1.0 CHC 6:KC2309 3.5 85.3 1.0 CHD 6:KC2309 3.5 85.3 1.0 CD 6:GLN121 3.6 84.0 1.0 NE2 6:GLN121 3.8 84.0 1.0 C3D 6:KC2309 4.1 85.3 1.0 C2D 6:KC2309 4.2 85.3 1.0 C2B 6:KC2309 4.2 85.3 1.0 C3B 6:KC2309 4.2 85.3 1.0 C2C 6:KC2309 4.3 85.3 1.0 C3A 6:KC2309 4.3 85.3 1.0 C3C 6:KC2309 4.3 85.3 1.0 C2A 6:KC2309 4.3 85.3 1.0 C26 6:A86302 4.8 83.0 1.0 C25 6:A86302 4.8 83.0 1.0 C27 6:A86302 4.9 83.0 1.0 CBD 6:KC2309 4.9 85.3 1.0 CG 6:GLN121 4.9 84.0 1.0 C28 6:A86302 5.0 83.0 1.0

Magnesium binding site 6 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg310 b:77.6 occ:1.00 MG 6:KC1310 0.0 77.6 1.0 ND 6:KC1310 1.9 77.6 1.0 NB 6:KC1310 2.0 77.6 1.0 NC 6:KC1310 2.0 77.6 1.0 NA 6:KC1310 2.0 77.6 1.0 C4D 6:KC1310 2.9 77.6 1.0 OE1 6:GLU130 2.9 79.2 1.0 C1B 6:KC1310 2.9 77.6 1.0 C4B 6:KC1310 3.0 77.6 1.0 C1D 6:KC1310 3.0 77.6 1.0 C4A 6:KC1310 3.0 77.6 1.0 C1C 6:KC1310 3.1 77.6 1.0 C4C 6:KC1310 3.1 77.6 1.0 OE2 6:GLU130 3.1 79.2 1.0 C1A 6:KC1310 3.1 77.6 1.0 CD 6:GLU130 3.1 79.2 1.0 CHB 6:KC1310 3.4 77.6 1.0 CHC 6:KC1310 3.4 77.6 1.0 CHA 6:KC1310 3.5 77.6 1.0 CHD 6:KC1310 3.5 77.6 1.0 C3D 6:KC1310 4.1 77.6 1.0 C2D 6:KC1310 4.1 77.6 1.0 C2B 6:KC1310 4.2 77.6 1.0 C3B 6:KC1310 4.2 77.6 1.0 CG 6:GLU130 4.2 79.2 1.0 C3A 6:KC1310 4.3 77.6 1.0 C3C 6:KC1310 4.3 77.6 1.0 C2C 6:KC1310 4.3 77.6 1.0 C2A 6:KC1310 4.3 77.6 1.0 NZ 6:LYS68 4.8 75.8 1.0 CMD 6:KC2307 4.8 80.7 1.0 CBD 6:KC1310 4.9 77.6 1.0 CB 6:GLU130 5.0 79.2 1.0

Magnesium binding site 7 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg311 b:81.9 occ:1.00 MG 6:CLA311 0.0 81.9 1.0 NB 6:CLA311 2.0 81.9 1.0 ND 6:CLA311 2.0 81.9 1.0 NA 6:CLA311 2.1 81.9 1.0 NC 6:CLA311 2.1 81.9 1.0 C4D 6:CLA311 2.9 81.9 1.0 OE2 6:GLU167 3.0 80.1 1.0 C1B 6:CLA311 3.0 81.9 1.0 C4A 6:CLA311 3.0 81.9 1.0 C4B 6:CLA311 3.1 81.9 1.0 C1C 6:CLA311 3.1 81.9 1.0 C4C 6:CLA311 3.1 81.9 1.0 C1A 6:CLA311 3.1 81.9 1.0 C1D 6:CLA311 3.2 81.9 1.0 CHB 6:CLA311 3.4 81.9 1.0 CHC 6:CLA311 3.4 81.9 1.0 CHA 6:CLA311 3.5 81.9 1.0 CHD 6:CLA311 3.5 81.9 1.0 CD 6:GLU167 3.6 80.1 1.0 C1 6:CLA311 3.9 81.9 1.0 CG 6:GLU167 4.1 80.1 1.0 C3D 6:CLA311 4.3 81.9 1.0 C2B 6:CLA311 4.3 81.9 1.0 OE1 6:GLU167 4.3 80.1 1.0 C3B 6:CLA311 4.3 81.9 1.0 C2C 6:CLA311 4.3 81.9 1.0 C2D 6:CLA311 4.4 81.9 1.0 C3C 6:CLA311 4.4 81.9 1.0 O3 6:A86304 4.4 81.2 1.0 C3A 6:CLA311 4.4 81.9 1.0 C2A 6:CLA311 4.4 81.9 1.0 C37 6:A86304 4.5 81.2 1.0 NE 6:ARG71 4.5 76.7 1.0 O1A 6:CLA311 4.5 81.9 1.0 NH2 6:ARG71 4.6 76.7 1.0 CGA 6:CLA311 4.7 81.9 1.0 O2A 6:CLA311 4.8 81.9 1.0 CZ 6:ARG71 4.9 76.7 1.0 CBD 6:CLA311 4.9 81.9 1.0 CB 6:GLU167 4.9 80.1 1.0 C2 6:CLA311 5.0 81.9 1.0

Magnesium binding site 8 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg312 b:80.4 occ:1.00 MG 6:KC1312 0.0 80.4 1.0 ND 6:KC1312 2.0 80.4 1.0 NB 6:KC1312 2.0 80.4 1.0 NC 6:KC1312 2.0 80.4 1.0 NA 6:KC1312 2.1 80.4 1.0 OD1 6:ASN170 2.8 78.0 1.0 C4D 6:KC1312 2.9 80.4 1.0 C1B 6:KC1312 2.9 80.4 1.0 C4B 6:KC1312 3.0 80.4 1.0 C1D 6:KC1312 3.0 80.4 1.0 C4A 6:KC1312 3.1 80.4 1.0 C4C 6:KC1312 3.1 80.4 1.0 C1C 6:KC1312 3.1 80.4 1.0 C1A 6:KC1312 3.1 80.4 1.0 CHB 6:KC1312 3.4 80.4 1.0 CHC 6:KC1312 3.4 80.4 1.0 CHA 6:KC1312 3.5 80.4 1.0 CHD 6:KC1312 3.5 80.4 1.0 CG 6:ASN170 3.6 78.0 1.0 ND2 6:ASN170 3.9 78.0 1.0 C8 6:CLA305 3.9 85.6 1.0 C9 6:CLA305 4.0 85.6 1.0 C3D 6:KC1312 4.1 80.4 1.0 C2D 6:KC1312 4.1 80.4 1.0 C2B 6:KC1312 4.2 80.4 1.0 C3B 6:KC1312 4.2 80.4 1.0 C3A 6:KC1312 4.3 80.4 1.0 C3C 6:KC1312 4.3 80.4 1.0 C2C 6:KC1312 4.3 80.4 1.0 C2A 6:KC1312 4.3 80.4 1.0 C24 7:A86301 4.6 84.2 1.0 C7 6:CLA305 4.9 85.6 1.0 C10 6:CLA305 4.9 85.6 1.0 CBD 6:KC1312 4.9 80.4 1.0 CB 6:ASN170 5.0 78.0 1.0

Magnesium binding site 9 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg313 b:86.0 occ:1.00 MG 6:CLA313 0.0 86.0 1.0 NB 6:CLA313 2.0 86.0 1.0 ND 6:CLA313 2.0 86.0 1.0 NC 6:CLA313 2.1 86.0 1.0 NA 6:CLA313 2.1 86.0 1.0 C4D 6:CLA313 2.9 86.0 1.0 CE1 6:HIS184 3.0 83.2 1.0 C1B 6:CLA313 3.0 86.0 1.0 C4A 6:CLA313 3.0 86.0 1.0 C4B 6:CLA313 3.1 86.0 1.0 C1C 6:CLA313 3.1 86.0 1.0 C4C 6:CLA313 3.1 86.0 1.0 C1D 6:CLA313 3.2 86.0 1.0 C1A 6:CLA313 3.2 86.0 1.0 CHB 6:CLA313 3.4 86.0 1.0 CHC 6:CLA313 3.4 86.0 1.0 CHA 6:CLA313 3.5 86.0 1.0 CHD 6:CLA313 3.5 86.0 1.0 NE2 6:HIS184 3.8 83.2 1.0 ND1 6:HIS184 4.0 83.2 1.0 C3D 6:CLA313 4.3 86.0 1.0 C2B 6:CLA313 4.3 86.0 1.0 C3B 6:CLA313 4.3 86.0 1.0 C2C 6:CLA313 4.3 86.0 1.0 C2D 6:CLA313 4.4 86.0 1.0 C3C 6:CLA313 4.4 86.0 1.0 C3A 6:CLA313 4.4 86.0 1.0 C2A 6:CLA313 4.5 86.0 1.0 CBD 6:CLA313 4.9 86.0 1.0

Magnesium binding site 10 out of 47 in the Fcp Pentamer in Chaetoceros Gracilis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Fcp Pentamer in Chaetoceros Gracilis within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg314 b:85.6 occ:1.00 MG 6:CLA314 0.0 85.6 1.0 NB 6:CLA314 2.0 85.6 1.0 ND 6:CLA314 2.0 85.6 1.0 NC 6:CLA314 2.1 85.6 1.0 NA 6:CLA314 2.1 85.6 1.0 C4D 6:CLA314 2.9 85.6 1.0 NE1 6:TRP133 3.0 77.9 1.0 C1B 6:CLA314 3.0 85.6 1.0 C4A 6:CLA314 3.0 85.6 1.0 C4B 6:CLA314 3.1 85.6 1.0 C1C 6:CLA314 3.1 85.6 1.0 C4C 6:CLA314 3.1 85.6 1.0 C1A 6:CLA314 3.2 85.6 1.0 C1D 6:CLA314 3.2 85.6 1.0 CHB 6:CLA314 3.4 85.6 1.0 CHC 6:CLA314 3.4 85.6 1.0 CD1 6:TRP133 3.5 77.9 1.0 CHA 6:CLA314 3.5 85.6 1.0 CHD 6:CLA314 3.5 85.6 1.0 CE2 6:TRP133 4.1 77.9 1.0 C3D 6:CLA314 4.3 85.6 1.0 C2B 6:CLA314 4.3 85.6 1.0 C3B 6:CLA314 4.3 85.6 1.0 C2C 6:CLA314 4.3 85.6 1.0 C2D 6:CLA314 4.4 85.6 1.0 C3C 6:CLA314 4.4 85.6 1.0 C3A 6:CLA314 4.4 85.6 1.0 O 8:GLU39 4.4 84.3 1.0 C2A 6:CLA314 4.5 85.6 1.0 CG 6:TRP133 4.7 77.9 1.0 CZ2 6:TRP133 4.8 77.9 1.0 CBD 6:CLA314 4.9 85.6 1.0 CD 8:PRO40 5.0 82.2 1.0

C.Zhou, Y.Feng, Z.Li, L.Shen, X.Li, Y.Wang, G.Han, T.Kuang, C.Liu, J.R.Shen, W.Wang. Structural and Spectroscopic Insights Into Fucoxanthin Chlorophyll A/C-Binding Proteins of Diatoms in Diverse Oligomeric States. Plant Commun. 01041 2024.
ISSN: ISSN 2590-3462
PubMed: 39030906
DOI: 10.1016/J.XPLC.2024.101041