Magnesium in PDB 8wcn: Cryo-Em Structure of PAO1-Imca with Gmpcpp

The binding sites of Magnesium atom in the Cryo-Em Structure of PAO1-Imca with Gmpcpp (pdb code 8wcn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of PAO1-Imca with Gmpcpp, PDB code: 8wcn:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of PAO1-Imca with Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of PAO1-Imca with Gmpcpp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:182.8 occ:1.00 O1B A:G2P501 1.9 191.9 1.0 OE2 A:GLU312 2.0 190.0 1.0 O3G A:G2P501 2.1 191.5 1.0 PB A:G2P501 2.4 193.4 1.0 C3A A:G2P501 2.5 190.7 1.0 PG A:G2P501 2.7 195.4 1.0 O3B A:G2P501 2.8 192.6 1.0 CD A:GLU312 2.9 190.8 1.0 O A:VAL269 2.9 202.5 1.0 O1G A:G2P501 3.0 193.7 1.0 OE1 A:GLU312 3.1 191.9 1.0 PA A:G2P501 3.4 193.9 1.0 OD2 A:ASP268 3.5 201.2 1.0 O2A A:G2P501 3.6 191.6 1.0 O1A A:G2P501 3.8 195.0 1.0 O2B A:G2P501 3.9 191.6 1.0 C A:VAL269 4.1 200.9 1.0 NZ A:LYS383 4.2 215.4 1.0 O2G A:G2P501 4.2 191.1 1.0 OD1 A:ASP268 4.2 201.7 1.0 CG A:ASP268 4.3 200.9 1.0 CG A:GLU312 4.3 190.6 1.0 CA A:ASP270 4.7 209.3 1.0 N A:ASP271 4.7 207.6 1.0 N A:ASP270 4.9 210.0 1.0 O5' A:G2P501 4.9 188.8 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of PAO1-Imca with Gmpcpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of PAO1-Imca with Gmpcpp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg503 b:209.4 occ:1.00 O3B B:G2P501 2.0 195.5 1.0 OE1 B:GLU312 2.0 191.7 1.0 OE2 B:GLU312 2.1 189.3 1.0 O2G B:G2P501 2.1 198.9 1.0 O B:VAL269 2.2 204.9 1.0 CD B:GLU312 2.3 190.3 1.0 O2B B:G2P501 2.3 196.5 1.0 PG B:G2P501 2.4 201.6 1.0 PB B:G2P501 2.6 196.1 1.0 O1G B:G2P501 2.7 196.3 1.0 OD1 B:ASP268 2.7 201.5 1.0 C B:VAL269 3.4 202.1 1.0 C3A B:G2P501 3.5 194.9 1.0 CG B:ASP268 3.5 202.2 1.0 OD2 B:ASP268 3.6 201.4 1.0 O3G B:G2P501 3.8 194.5 1.0 CG B:GLU312 3.8 190.7 1.0 O1B B:G2P501 4.0 195.2 1.0 O1A B:G2P501 4.0 195.4 1.0 CA B:ASP270 4.3 215.1 1.0 N B:ASP270 4.3 215.6 1.0 N B:VAL269 4.3 195.5 1.0 PA B:G2P501 4.4 195.5 1.0 CA B:VAL269 4.4 198.9 1.0 CB B:GLU312 4.6 189.8 1.0 N B:ASP271 4.7 215.0 1.0 C B:ASP270 4.8 213.6 1.0 CB B:VAL269 4.9 199.4 1.0 CB B:ASP268 4.9 202.7 1.0

X.Zhan, K.Zhang, C.Wang, Q.Fan, X.Tang, X.Zhang, K.Wang, Y.Fu, H.Liang. A C-Di-Gmp Signaling Module Controls Responses to Iron in Pseudomonas Aeruginosa. Nat Commun V. 15 1860 2024.
ISSN: ESSN 2041-1723
PubMed: 38424057
DOI: 10.1038/S41467-024-46149-3