Magnesium in PDB 8wdh: Crystal Structure of Glucose Isomerase By Fixed-Target Pink-Beam Serial Synchrotron Crystallography

The structure of Crystal Structure of Glucose Isomerase By Fixed-Target Pink-Beam Serial Synchrotron Crystallography, PDB code: 8wdh was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	7.00 / 1.70
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	95.138, 101.936, 105.156, 90, 90, 90
R / Rfree (%)	25.1 / 27.8

The binding sites of Magnesium atom in the Crystal Structure of Glucose Isomerase By Fixed-Target Pink-Beam Serial Synchrotron Crystallography (pdb code 8wdh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Glucose Isomerase By Fixed-Target Pink-Beam Serial Synchrotron Crystallography, PDB code: 8wdh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Glucose Isomerase By Fixed-Target Pink-Beam Serial Synchrotron Crystallography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glucose Isomerase By Fixed-Target Pink-Beam Serial Synchrotron Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:2.5 occ:1.00 OD2 A:ASP257 2.4 9.5 1.0 CG A:ASP257 2.9 4.8 1.0 OD1 A:ASP257 3.1 6.6 1.0 O A:HOH648 3.3 4.0 1.0 OE2 A:GLU217 3.4 3.3 1.0 OD2 A:ASP255 3.4 4.5 1.0 OD1 A:ASP287 3.5 4.0 1.0 OE1 A:GLU217 3.7 2.6 1.0 MG A:MG402 3.7 2.2 1.0 O A:HOH501 3.7 2.6 1.0 CG A:ASP287 3.9 3.0 1.0 CD A:GLU217 4.0 3.4 1.0 OD2 A:ASP287 4.0 4.8 1.0 CB A:ASP257 4.1 4.3 1.0 O A:HOH725 4.1 18.6 1.0 O A:HOH754 4.2 8.3 1.0 NE2 A:HIS220 4.2 4.1 1.0 NZ A:LYS289 4.3 20.0 1.0 O A:ASP287 4.4 2.8 1.0 CG A:ASP255 4.5 3.8 1.0 ND2 A:ASN247 4.7 2.5 1.0 O A:HOH729 4.8 5.0 1.0 CB A:ASP287 4.8 3.9 1.0 CE A:LYS289 4.8 8.6 1.0 C A:ASP287 4.8 3.1 1.0 OD1 A:ASP255 4.9 6.5 1.0 CE1 A:HIS220 5.0 4.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Glucose Isomerase By Fixed-Target Pink-Beam Serial Synchrotron Crystallography


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Glucose Isomerase By Fixed-Target Pink-Beam Serial Synchrotron Crystallography within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:2.2 occ:1.00 OE1 A:GLU217 1.8 2.6 1.0 OE2 A:GLU181 2.3 13.2 1.0 OD2 A:ASP287 2.4 4.8 1.0 CD A:GLU217 2.9 3.4 1.0 OD2 A:ASP245 3.2 3.8 1.0 CG A:ASP287 3.3 3.0 1.0 O A:HOH535 3.3 4.4 1.0 CD A:GLU181 3.4 4.6 1.0 CE1 A:HIS220 3.4 4.3 1.0 OE2 A:GLU217 3.6 3.3 1.0 O A:HOH754 3.6 8.3 1.0 O A:HOH526 3.7 3.3 1.0 MG A:MG401 3.7 2.5 1.0 NE2 A:HIS220 3.8 4.1 1.0 OE1 A:GLU181 3.8 3.6 1.0 CB A:ASP287 3.9 3.9 1.0 CG A:GLU217 4.0 4.0 1.0 O A:HOH725 4.0 18.6 1.0 OD1 A:ASP287 4.1 4.0 1.0 CB A:GLU217 4.1 4.1 1.0 CG A:ASP245 4.2 3.4 1.0 ND1 A:HIS220 4.2 5.2 1.0 O A:HOH750 4.4 3.6 1.0 CB A:ASP245 4.6 4.5 1.0 CG A:GLU181 4.7 4.7 1.0 O A:HOH641 4.7 2.5 1.0 CD2 A:HIS220 4.7 4.2 1.0 CG A:HIS220 5.0 4.4 1.0

K.H.Nam, K.H.Nam. N/A N/A.