Magnesium in PDB 8wgo: Cryo-Em Structure of Classiii Lanthipeptide Modification Enzyme Pnekc in the Presence of Pnea and Gtprs.

The binding sites of Magnesium atom in the Cryo-Em Structure of Classiii Lanthipeptide Modification Enzyme Pnekc in the Presence of Pnea and Gtprs. (pdb code 8wgo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Classiii Lanthipeptide Modification Enzyme Pnekc in the Presence of Pnea and Gtprs., PDB code: 8wgo:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Classiii Lanthipeptide Modification Enzyme Pnekc in the Presence of Pnea and Gtprs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Classiii Lanthipeptide Modification Enzyme Pnekc in the Presence of Pnea and Gtprs. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg901 b:30.0 occ:1.00 OE1 A:GLN374 3.0 73.9 1.0 OD2 A:ASP353 3.8 85.6 1.0 CD A:GLN374 4.0 73.9 1.0 OD1 A:ASP371 4.2 93.2 1.0 O1B A:GSP902 4.2 141.7 1.0 NE2 A:GLN374 4.2 73.9 1.0 OE2 A:GLU373 4.4 87.8 1.0 OD2 A:ASP371 4.6 93.2 1.0 CB A:GLU373 4.6 87.8 1.0 O2G A:GSP902 4.6 141.7 1.0 O3B A:GSP902 4.7 141.7 1.0 CG A:ASP371 4.8 93.2 1.0 CD A:GLU373 4.8 87.8 1.0 PB A:GSP902 4.9 141.7 1.0 CG A:ASP353 5.0 85.6 1.0

Y.Li, K.Shao, Z.Li, K.Zhu, B.K.Gan, J.Shi, Y.Xiao, M.Luo. Mechanistic Insights Into Lanthipeptide Modification By A Distinct Subclass of Lankc Enzyme That Forms Dimers. Nat Commun V. 15 7090 2024.
ISSN: ESSN 2041-1723
PubMed: 39154050
DOI: 10.1038/S41467-024-51600-6