Magnesium in PDB 8wh2: Mpox E5 Hexamer 2ATP, 2ADP, and Ssdna Binding Comformation

The binding sites of Magnesium atom in the Mpox E5 Hexamer 2ATP, 2ADP, and Ssdna Binding Comformation (pdb code 8wh2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mpox E5 Hexamer 2ATP, 2ADP, and Ssdna Binding Comformation, PDB code: 8wh2:

Magnesium binding site 1 out of 1 in the Mpox E5 Hexamer 2ATP, 2ADP, and Ssdna Binding Comformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mpox E5 Hexamer 2ATP, 2ADP, and Ssdna Binding Comformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:31.9 occ:1.00 OG B:SER510 2.0 25.5 1.0 O3G B:ATP801 2.1 37.9 1.0 O2B B:ATP801 2.8 17.7 1.0 CB B:SER510 3.2 12.7 1.0 PG B:ATP801 3.5 56.0 1.0 OE2 F:GLU579 3.5 36.9 1.0 O3B B:ATP801 3.7 23.2 1.0 PB B:ATP801 3.9 12.5 1.0 O1A B:ATP801 4.0 23.4 1.0 NH2 F:ARG620 4.2 24.3 1.0 OE1 F:GLU579 4.2 40.7 1.0 CD F:GLU579 4.3 36.2 1.0 OE2 B:GLU557 4.3 44.3 1.0 CA B:SER510 4.4 3.0 1.0 O2G B:ATP801 4.4 33.5 1.0 O1G B:ATP801 4.4 30.4 1.0 O3A B:ATP801 4.5 23.8 1.0 N B:SER510 4.5 11.7 1.0 NH2 F:ARG619 4.9 25.4 1.0 PA B:ATP801 4.9 11.6 1.0

Y.Xu, Y.Wu, Y.Zhang, K.Gao, X.Wu, Y.Yang, D.Li, B.Yang, Z.Zhang, C.Dong. Essential and Multifunctional Mpox Virus E5 Helicase-Primase in Double and Single Hexamer. Sci Adv V. 10 L1150 2024.
ISSN: ESSN 2375-2548
PubMed: 39167653
DOI: 10.1126/SCIADV.ADL1150