Magnesium in PDB 8wm6: The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution

Other elements in 8wm6:

The structure of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 277 in 8wm6

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Magnesium binding site 1 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:19.7
occ:1.00
MG A:CLA801 0.0 19.7 1.0
NB A:CLA801 2.0 19.7 1.0
ND A:CLA801 2.0 19.7 1.0
NA A:CLA801 2.1 19.7 1.0
NC A:CLA801 2.1 19.7 1.0
NE2 A:HIS679 2.3 19.7 1.0
C4D A:CLA801 2.9 19.7 1.0
C1B A:CLA801 3.0 19.7 1.0
C4A A:CLA801 3.0 19.7 1.0
C4B A:CLA801 3.1 19.7 1.0
C1C A:CLA801 3.1 19.7 1.0
C1D A:CLA801 3.1 19.7 1.0
C4C A:CLA801 3.2 19.7 1.0
C1A A:CLA801 3.2 19.7 1.0
CE1 A:HIS679 3.2 19.7 1.0
CD2 A:HIS679 3.2 19.7 1.0
CHB A:CLA801 3.4 19.7 1.0
CHC A:CLA801 3.4 19.7 1.0
CHA A:CLA801 3.5 19.7 1.0
CHD A:CLA801 3.5 19.7 1.0
CAB B:CLA802 3.9 9.0 1.0
C3B B:CLA802 4.0 9.0 1.0
C4B B:CLA802 4.2 9.0 1.0
CHC B:CLA802 4.2 9.0 1.0
C3D A:CLA801 4.3 19.7 1.0
C2B A:CLA801 4.3 19.7 1.0
C3B A:CLA801 4.3 19.7 1.0
C3A A:CLA801 4.3 19.7 1.0
ND1 A:HIS679 4.3 19.7 1.0
C2D A:CLA801 4.3 19.7 1.0
C2C A:CLA801 4.4 19.7 1.0
C3C A:CLA801 4.4 19.7 1.0
CG A:HIS679 4.4 19.7 1.0
C2A A:CLA801 4.5 19.7 1.0
CED B:CLA801 4.7 9.6 1.0
C2B B:CLA802 4.7 9.0 1.0
CMA A:CLA801 4.8 19.7 1.0
CBD A:CLA801 4.9 19.7 1.0
CBB B:CLA802 5.0 9.0 1.0
C1C B:CLA802 5.0 9.0 1.0

Magnesium binding site 2 out of 277 in 8wm6

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Magnesium binding site 2 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:9.1
occ:1.00
MG A:CLA802 0.0 9.1 1.0
NB A:CLA802 2.0 9.1 1.0
ND A:CLA802 2.0 9.1 1.0
NA A:CLA802 2.1 9.1 1.0
NC A:CLA802 2.1 9.1 1.0
SD A:MET687 2.2 5.2 1.0
C4D A:CLA802 2.9 9.1 1.0
C1B A:CLA802 3.0 9.1 1.0
C4A A:CLA802 3.0 9.1 1.0
C4B A:CLA802 3.1 9.1 1.0
C1C A:CLA802 3.1 9.1 1.0
C4C A:CLA802 3.1 9.1 1.0
C1D A:CLA802 3.1 9.1 1.0
C1A A:CLA802 3.1 9.1 1.0
CHB A:CLA802 3.4 9.1 1.0
CHC A:CLA802 3.5 9.1 1.0
CHA A:CLA802 3.5 9.1 1.0
CE A:MET687 3.5 5.2 1.0
CHD A:CLA802 3.5 9.1 1.0
CG A:MET687 3.5 5.2 1.0
CB A:MET687 3.8 5.2 1.0
NE1 B:TRP581 3.9 7.6 1.0
CZ2 B:TRP581 4.2 7.6 1.0
C3D A:CLA802 4.2 9.1 1.0
C2B A:CLA802 4.3 9.1 1.0
C3B A:CLA802 4.3 9.1 1.0
C2C A:CLA802 4.3 9.1 1.0
C2D A:CLA802 4.3 9.1 1.0
C3C A:CLA802 4.3 9.1 1.0
C3A A:CLA802 4.3 9.1 1.0
CE2 B:TRP581 4.4 7.6 1.0
C2A A:CLA802 4.4 9.1 1.0
CA A:MET687 4.9 5.2 1.0
CMA A:CLA802 4.9 9.1 1.0
CBD A:CLA802 4.9 9.1 1.0

Magnesium binding site 3 out of 277 in 8wm6

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Magnesium binding site 3 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:19.7
occ:1.00
MG A:CLA803 0.0 19.7 1.0
NB A:CLA803 2.0 19.7 1.0
ND A:CLA803 2.0 19.7 1.0
NC A:CLA803 2.1 19.7 1.0
NA A:CLA803 2.1 19.7 1.0
NE2 A:HIS57 2.3 13.9 1.0
CE1 A:HIS57 2.9 13.9 1.0
C4D A:CLA803 2.9 19.7 1.0
C1B A:CLA803 3.0 19.7 1.0
C4A A:CLA803 3.0 19.7 1.0
C4B A:CLA803 3.1 19.7 1.0
C1C A:CLA803 3.1 19.7 1.0
C4C A:CLA803 3.1 19.7 1.0
C1A A:CLA803 3.1 19.7 1.0
C1D A:CLA803 3.2 19.7 1.0
CHB A:CLA803 3.4 19.7 1.0
CHC A:CLA803 3.4 19.7 1.0
CD2 A:HIS57 3.5 13.9 1.0
CHA A:CLA803 3.5 19.7 1.0
CHD A:CLA803 3.5 19.7 1.0
C7 A:CLA810 4.0 20.6 1.0
ND1 A:HIS57 4.2 13.9 1.0
C5 A:CLA810 4.2 20.6 1.0
C3D A:CLA803 4.3 19.7 1.0
C2B A:CLA803 4.3 19.7 1.0
C2C A:CLA803 4.3 19.7 1.0
C3B A:CLA803 4.3 19.7 1.0
C3C A:CLA803 4.4 19.7 1.0
C2D A:CLA803 4.4 19.7 1.0
C3A A:CLA803 4.4 19.7 1.0
CG A:HIS57 4.4 13.9 1.0
C2A A:CLA803 4.5 19.7 1.0
C6 A:CLA810 4.6 20.6 1.0
CBB A:CLA804 4.8 9.5 1.0
CBD A:CLA803 4.9 19.7 1.0
CMA A:CLA803 5.0 19.7 1.0

Magnesium binding site 4 out of 277 in 8wm6

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Magnesium binding site 4 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg804

b:9.5
occ:1.00
MG A:CLA804 0.0 9.5 1.0
NB A:CLA804 2.0 9.5 1.0
ND A:CLA804 2.0 9.5 1.0
NC A:CLA804 2.1 9.5 1.0
NA A:CLA804 2.1 9.5 1.0
NE2 A:HIS77 2.2 11.1 1.0
C4D A:CLA804 2.9 9.5 1.0
CD2 A:HIS77 3.0 11.1 1.0
C1B A:CLA804 3.0 9.5 1.0
C4A A:CLA804 3.0 9.5 1.0
C1C A:CLA804 3.1 9.5 1.0
C4B A:CLA804 3.1 9.5 1.0
C1A A:CLA804 3.1 9.5 1.0
C4C A:CLA804 3.1 9.5 1.0
C1D A:CLA804 3.2 9.5 1.0
CE1 A:HIS77 3.2 11.1 1.0
CMB A:CLA829 3.4 21.5 1.0
CHC A:CLA804 3.4 9.5 1.0
CHB A:CLA804 3.4 9.5 1.0
CHA A:CLA804 3.5 9.5 1.0
CHD A:CLA804 3.6 9.5 1.0
CG A:HIS77 4.1 11.1 1.0
ND1 A:HIS77 4.2 11.1 1.0
C3D A:CLA804 4.3 9.5 1.0
C2B A:CLA804 4.3 9.5 1.0
C3B A:CLA804 4.3 9.5 1.0
C2C A:CLA804 4.3 9.5 1.0
C3C A:CLA804 4.4 9.5 1.0
C2D A:CLA804 4.4 9.5 1.0
C3A A:CLA804 4.4 9.5 1.0
C2A A:CLA804 4.4 9.5 1.0
CG2 A:ILE73 4.4 6.3 1.0
C2B A:CLA829 4.8 21.5 1.0
CBB A:CLA829 4.9 21.5 1.0
CBD A:CLA804 4.9 9.5 1.0

Magnesium binding site 5 out of 277 in 8wm6

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Magnesium binding site 5 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:19.7
occ:1.00
MG A:CLA805 0.0 19.7 1.0
NB A:CLA805 2.0 19.7 1.0
ND A:CLA805 2.0 19.7 1.0
NC A:CLA805 2.1 19.7 1.0
NA A:CLA805 2.1 19.7 1.0
OE1 A:GLN80 2.3 10.7 1.0
C4D A:CLA805 2.9 19.7 1.0
C1B A:CLA805 3.0 19.7 1.0
C4B A:CLA805 3.1 19.7 1.0
C4A A:CLA805 3.1 19.7 1.0
C1C A:CLA805 3.1 19.7 1.0
C1D A:CLA805 3.1 19.7 1.0
C4C A:CLA805 3.1 19.7 1.0
C1A A:CLA805 3.1 19.7 1.0
CD A:GLN80 3.2 10.7 1.0
CHB A:CLA805 3.4 19.7 1.0
CHC A:CLA805 3.4 19.7 1.0
CHA A:CLA805 3.5 19.7 1.0
CHD A:CLA805 3.5 19.7 1.0
C16 A:CLA805 3.6 19.7 1.0
C17 A:CLA805 3.6 19.7 1.0
NE2 A:GLN80 3.7 10.7 1.0
C3D A:CLA805 4.2 19.7 1.0
C2B A:CLA805 4.3 19.7 1.0
C3B A:CLA805 4.3 19.7 1.0
C2C A:CLA805 4.3 19.7 1.0
C2D A:CLA805 4.3 19.7 1.0
C3C A:CLA805 4.4 19.7 1.0
CMA A:CLA804 4.4 9.5 1.0
C3A A:CLA805 4.4 19.7 1.0
C2A A:CLA805 4.4 19.7 1.0
CG A:GLN80 4.5 10.7 1.0
C19 A:CLA805 4.7 19.7 1.0
C18 A:CLA805 4.7 19.7 1.0
CBD A:CLA805 4.9 19.7 1.0

Magnesium binding site 6 out of 277 in 8wm6

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Magnesium binding site 6 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg806

b:11.2
occ:1.00
MG A:CLA806 0.0 11.2 1.0
NB A:CLA806 2.0 11.2 1.0
ND A:CLA806 2.0 11.2 1.0
NC A:CLA806 2.1 11.2 1.0
NA A:CLA806 2.1 11.2 1.0
NE2 A:HIS94 2.2 7.5 1.0
C4D A:CLA806 2.9 11.2 1.0
C1B A:CLA806 3.0 11.2 1.0
C4A A:CLA806 3.1 11.2 1.0
C4B A:CLA806 3.1 11.2 1.0
C1C A:CLA806 3.1 11.2 1.0
CE1 A:HIS94 3.1 7.5 1.0
C4C A:CLA806 3.1 11.2 1.0
C1D A:CLA806 3.2 11.2 1.0
C1A A:CLA806 3.2 11.2 1.0
CD2 A:HIS94 3.3 7.5 1.0
CHB A:CLA806 3.4 11.2 1.0
CHC A:CLA806 3.4 11.2 1.0
CHA A:CLA806 3.5 11.2 1.0
CHD A:CLA806 3.5 11.2 1.0
C3D A:CLA806 4.2 11.2 1.0
ND1 A:HIS94 4.3 7.5 1.0
C2B A:CLA806 4.3 11.2 1.0
C3B A:CLA806 4.3 11.2 1.0
C2C A:CLA806 4.3 11.2 1.0
C2D A:CLA806 4.3 11.2 1.0
C3C A:CLA806 4.4 11.2 1.0
CG A:HIS94 4.4 7.5 1.0
C3A A:CLA806 4.4 11.2 1.0
C2A A:CLA806 4.5 11.2 1.0
CBD A:CLA806 4.9 11.2 1.0

Magnesium binding site 7 out of 277 in 8wm6

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Magnesium binding site 7 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg807

b:17.6
occ:1.00
MG A:CLA807 0.0 17.6 1.0
NB A:CLA807 2.0 17.6 1.0
ND A:CLA807 2.0 17.6 1.0
NA A:CLA807 2.1 17.6 1.0
NC A:CLA807 2.1 17.6 1.0
OE1 A:GLN116 2.1 8.0 1.0
C4D A:CLA807 2.9 17.6 1.0
C1B A:CLA807 3.0 17.6 1.0
C4A A:CLA807 3.0 17.6 1.0
CD A:GLN116 3.0 8.0 1.0
C4B A:CLA807 3.1 17.6 1.0
C1C A:CLA807 3.1 17.6 1.0
C4C A:CLA807 3.1 17.6 1.0
C1A A:CLA807 3.1 17.6 1.0
C1D A:CLA807 3.2 17.6 1.0
CHB A:CLA807 3.4 17.6 1.0
CHC A:CLA807 3.4 17.6 1.0
CHA A:CLA807 3.5 17.6 1.0
NE2 A:GLN116 3.5 8.0 1.0
CHD A:CLA807 3.5 17.6 1.0
C5 A:CLA827 3.9 24.2 1.0
C3 A:CLA827 4.2 24.2 1.0
C3D A:CLA807 4.2 17.6 1.0
CG A:GLN116 4.3 8.0 1.0
C2B A:CLA807 4.3 17.6 1.0
C4 A:CLA827 4.3 24.2 1.0
C3B A:CLA807 4.3 17.6 1.0
C2C A:CLA807 4.3 17.6 1.0
C2D A:CLA807 4.3 17.6 1.0
C3C A:CLA807 4.3 17.6 1.0
C3A A:CLA807 4.4 17.6 1.0
C2A A:CLA807 4.4 17.6 1.0
CB A:GLN116 4.9 8.0 1.0
CBD A:CLA807 4.9 17.6 1.0
C2 A:CLA827 4.9 24.2 1.0
CBA A:CLA807 5.0 17.6 1.0

Magnesium binding site 8 out of 277 in 8wm6

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Magnesium binding site 8 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg808

b:13.9
occ:1.00
MG A:CLA808 0.0 13.9 1.0
NB A:CLA808 2.0 13.9 1.0
ND A:CLA808 2.0 13.9 1.0
NC A:CLA808 2.1 13.9 1.0
NA A:CLA808 2.1 13.9 1.0
OE1 A:GLN124 2.2 8.0 1.0
C4D A:CLA808 2.9 13.9 1.0
C1B A:CLA808 3.0 13.9 1.0
C4B A:CLA808 3.0 13.9 1.0
C4A A:CLA808 3.1 13.9 1.0
C1C A:CLA808 3.1 13.9 1.0
C1D A:CLA808 3.1 13.9 1.0
C1A A:CLA808 3.2 13.9 1.0
C4C A:CLA808 3.2 13.9 1.0
CD A:GLN124 3.3 8.0 1.0
CHC A:CLA808 3.4 13.9 1.0
CHB A:CLA808 3.4 13.9 1.0
CHA A:CLA808 3.4 13.9 1.0
CHD A:CLA808 3.5 13.9 1.0
C17 A:LHG849 3.7 15.7 1.0
NE2 A:GLN124 3.8 8.0 1.0
C3D A:CLA808 4.2 13.9 1.0
C3B A:CLA808 4.2 13.9 1.0
C2B A:CLA808 4.2 13.9 1.0
C2C A:CLA808 4.3 13.9 1.0
C2D A:CLA808 4.3 13.9 1.0
C3C A:CLA808 4.4 13.9 1.0
C3A A:CLA808 4.4 13.9 1.0
C2A A:CLA808 4.5 13.9 1.0
CG A:GLN124 4.5 8.0 1.0
C18 A:LHG849 4.5 15.7 1.0
CB A:GLN124 4.6 8.0 1.0
CBD A:CLA808 4.9 13.9 1.0
C16 A:LHG849 4.9 15.7 1.0

Magnesium binding site 9 out of 277 in 8wm6

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Magnesium binding site 9 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg809

b:9.2
occ:1.00
MG A:CLA809 0.0 9.2 1.0
NB A:CLA809 2.0 9.2 1.0
ND A:CLA809 2.0 9.2 1.0
NA A:CLA809 2.1 9.2 1.0
NC A:CLA809 2.1 9.2 1.0
NE2 A:HIS180 2.2 6.3 1.0
C4D A:CLA809 2.9 9.2 1.0
CE1 A:HIS180 3.0 6.3 1.0
C1B A:CLA809 3.0 9.2 1.0
C4A A:CLA809 3.0 9.2 1.0
C4B A:CLA809 3.1 9.2 1.0
C1C A:CLA809 3.1 9.2 1.0
C4C A:CLA809 3.1 9.2 1.0
C1D A:CLA809 3.1 9.2 1.0
C1A A:CLA809 3.2 9.2 1.0
CD2 A:HIS180 3.3 6.3 1.0
CHB A:CLA809 3.4 9.2 1.0
CHC A:CLA809 3.4 9.2 1.0
CHA A:CLA809 3.5 9.2 1.0
CHD A:CLA809 3.5 9.2 1.0
ND1 A:HIS180 4.2 6.3 1.0
C3D A:CLA809 4.3 9.2 1.0
C2B A:CLA809 4.3 9.2 1.0
C3B A:CLA809 4.3 9.2 1.0
C2C A:CLA809 4.3 9.2 1.0
C2D A:CLA809 4.3 9.2 1.0
C3C A:CLA809 4.4 9.2 1.0
C3A A:CLA809 4.4 9.2 1.0
CG A:HIS180 4.4 6.3 1.0
C2A A:CLA809 4.5 9.2 1.0
CBD A:CLA809 4.9 9.2 1.0

Magnesium binding site 10 out of 277 in 8wm6

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Magnesium binding site 10 out of 277 in the The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of The Structure of Psi-Cac(L-14)of R.Salina at 2.7 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg810

b:20.6
occ:1.00
MG A:CLA810 0.0 20.6 1.0
NB A:CLA810 2.0 20.6 1.0
ND A:CLA810 2.0 20.6 1.0
NC A:CLA810 2.1 20.6 1.0
NA A:CLA810 2.1 20.6 1.0
NE2 A:HIS182 2.2 10.6 1.0
C4D A:CLA810 2.9 20.6 1.0
O1A A:CLA803 3.0 19.7 1.0
C1B A:CLA810 3.0 20.6 1.0
C4A A:CLA810 3.1 20.6 1.0
C4B A:CLA810 3.1 20.6 1.0
C1C A:CLA810 3.1 20.6 1.0
CE1 A:HIS182 3.1 10.6 1.0
C4C A:CLA810 3.1 20.6 1.0
C1D A:CLA810 3.2 20.6 1.0
C1A A:CLA810 3.2 20.6 1.0
CD2 A:HIS182 3.2 10.6 1.0
CHB A:CLA810 3.4 20.6 1.0
CHC A:CLA810 3.4 20.6 1.0
CHA A:CLA810 3.5 20.6 1.0
CHD A:CLA810 3.5 20.6 1.0
CGA A:CLA803 3.9 19.7 1.0
ND1 A:HIS182 4.2 10.6 1.0
C3D A:CLA810 4.3 20.6 1.0
CG A:HIS182 4.3 10.6 1.0
C2B A:CLA810 4.3 20.6 1.0
C3B A:CLA810 4.3 20.6 1.0
C2C A:CLA810 4.3 20.6 1.0
C2D A:CLA810 4.3 20.6 1.0
C3C A:CLA810 4.4 20.6 1.0
C3A A:CLA810 4.4 20.6 1.0
C2A A:CLA810 4.5 20.6 1.0
CD2 A:TYR181 4.6 9.8 1.0
CBA A:CLA803 4.6 19.7 1.0
O2A A:CLA803 4.8 19.7 1.0
CAA A:CLA803 4.9 19.7 1.0
CBD A:CLA810 4.9 20.6 1.0
CD1 A:TRP178 5.0 9.3 1.0

Reference:

S.Zhang, L.Si, X.Su, X.Zhao, X.An, M.Li. Growth Phase-Dependent Reorganization of Cryptophyte Photosystem I Antennae. Commun Biol V. 7 560 2024.
ISSN: ESSN 2399-3642
PubMed: 38734819
DOI: 10.1038/S42003-024-06268-5
Page generated: Fri Oct 4 23:16:27 2024

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