Magnesium in PDB 8wmw: The Structure of Psi-11CAC at the Stationary Growth Phase

Enzymatic activity of The Structure of Psi-11CAC at the Stationary Growth Phase

All present enzymatic activity of The Structure of Psi-11CAC at the Stationary Growth Phase:
1.97.1.12;

Other elements in 8wmw:

The structure of The Structure of Psi-11CAC at the Stationary Growth Phase also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

Magnesium binding site 1 out of 232 in 8wmw

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Magnesium binding site 1 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg801

b:10.8
occ:1.00
MG A:CLA801 0.0 10.8 1.0
NB A:CLA801 2.0 10.8 1.0
ND A:CLA801 2.0 10.8 1.0
NA A:CLA801 2.1 10.8 1.0
NC A:CLA801 2.1 10.8 1.0
NE2 A:HIS679 2.3 11.1 1.0
C4D A:CLA801 2.9 10.8 1.0
C1B A:CLA801 3.0 10.8 1.0
C4A A:CLA801 3.0 10.8 1.0
C4B A:CLA801 3.1 10.8 1.0
C1C A:CLA801 3.1 10.8 1.0
C1D A:CLA801 3.1 10.8 1.0
C4C A:CLA801 3.2 10.8 1.0
C1A A:CLA801 3.2 10.8 1.0
CE1 A:HIS679 3.2 11.1 1.0
CD2 A:HIS679 3.3 11.1 1.0
CHB A:CLA801 3.4 10.8 1.0
CHC A:CLA801 3.4 10.8 1.0
CHA A:CLA801 3.5 10.8 1.0
CHD A:CLA801 3.5 10.8 1.0
CAB B:CLA803 3.8 30.1 1.0
C3B B:CLA803 4.1 30.1 1.0
C3D A:CLA801 4.3 10.8 1.0
C2B A:CLA801 4.3 10.8 1.0
C3B A:CLA801 4.3 10.8 1.0
C3A A:CLA801 4.3 10.8 1.0
C2C A:CLA801 4.4 10.8 1.0
C2D A:CLA801 4.4 10.8 1.0
ND1 A:HIS679 4.4 11.1 1.0
C3C A:CLA801 4.4 10.8 1.0
C4B B:CLA803 4.4 30.1 1.0
CG A:HIS679 4.4 11.1 1.0
CHC B:CLA803 4.4 30.1 1.0
C2A A:CLA801 4.5 10.8 1.0
CMA A:CLA801 4.8 10.8 1.0
C2B B:CLA803 4.8 30.1 1.0
CBB B:CLA803 4.9 30.1 1.0
CBD A:CLA801 5.0 10.8 1.0

Magnesium binding site 2 out of 232 in 8wmw

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Magnesium binding site 2 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:11.1
occ:1.00
MG A:CLA802 0.0 11.1 1.0
NB A:CLA802 2.0 11.1 1.0
ND A:CLA802 2.0 11.1 1.0
NC A:CLA802 2.1 11.1 1.0
NA A:CLA802 2.1 11.1 1.0
SD A:MET687 2.2 10.2 1.0
C4D A:CLA802 2.9 11.1 1.0
C1B A:CLA802 3.0 11.1 1.0
C4A A:CLA802 3.0 11.1 1.0
C4B A:CLA802 3.1 11.1 1.0
C1C A:CLA802 3.1 11.1 1.0
C4C A:CLA802 3.1 11.1 1.0
C1A A:CLA802 3.1 11.1 1.0
C1D A:CLA802 3.1 11.1 1.0
CHB A:CLA802 3.4 11.1 1.0
CHC A:CLA802 3.4 11.1 1.0
CHA A:CLA802 3.5 11.1 1.0
CE A:MET687 3.5 10.2 1.0
CG A:MET687 3.5 10.2 1.0
CHD A:CLA802 3.5 11.1 1.0
CB A:MET687 3.8 10.2 1.0
NE1 B:TRP581 4.0 10.9 1.0
C3D A:CLA802 4.2 11.1 1.0
C2B A:CLA802 4.3 11.1 1.0
CZ2 B:TRP581 4.3 10.9 1.0
C3B A:CLA802 4.3 11.1 1.0
C2C A:CLA802 4.3 11.1 1.0
C2D A:CLA802 4.3 11.1 1.0
C3A A:CLA802 4.3 11.1 1.0
C3C A:CLA802 4.3 11.1 1.0
C2A A:CLA802 4.4 11.1 1.0
CE2 B:TRP581 4.5 10.9 1.0
CMA A:CLA802 4.9 11.1 1.0
CBD A:CLA802 4.9 11.1 1.0
CA A:MET687 5.0 10.2 1.0

Magnesium binding site 3 out of 232 in 8wmw

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Magnesium binding site 3 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:17.9
occ:1.00
MG A:CLA803 0.0 17.9 1.0
NB A:CLA803 2.0 17.9 1.0
ND A:CLA803 2.0 17.9 1.0
NC A:CLA803 2.1 17.9 1.0
NA A:CLA803 2.1 17.9 1.0
NE2 A:HIS57 2.2 17.2 1.0
C4D A:CLA803 2.9 17.9 1.0
CE1 A:HIS57 2.9 17.2 1.0
C1B A:CLA803 3.0 17.9 1.0
C4A A:CLA803 3.0 17.9 1.0
C4B A:CLA803 3.1 17.9 1.0
C1C A:CLA803 3.1 17.9 1.0
C4C A:CLA803 3.1 17.9 1.0
C1A A:CLA803 3.1 17.9 1.0
C1D A:CLA803 3.1 17.9 1.0
CD2 A:HIS57 3.4 17.2 1.0
CHB A:CLA803 3.4 17.9 1.0
CHC A:CLA803 3.4 17.9 1.0
CHA A:CLA803 3.5 17.9 1.0
CHD A:CLA803 3.5 17.9 1.0
C7 A:CLA810 4.0 18.7 1.0
ND1 A:HIS57 4.2 17.2 1.0
C5 A:CLA810 4.2 18.7 1.0
C3D A:CLA803 4.2 17.9 1.0
C2B A:CLA803 4.3 17.9 1.0
C3B A:CLA803 4.3 17.9 1.0
C2C A:CLA803 4.3 17.9 1.0
C3C A:CLA803 4.3 17.9 1.0
C2D A:CLA803 4.3 17.9 1.0
C3A A:CLA803 4.4 17.9 1.0
CG A:HIS57 4.4 17.2 1.0
C2A A:CLA803 4.4 17.9 1.0
C6 A:CLA810 4.6 18.7 1.0
CBD A:CLA803 4.9 17.9 1.0
CBB A:CLA804 4.9 14.6 1.0
CG1 A:VAL56 4.9 15.8 1.0

Magnesium binding site 4 out of 232 in 8wmw

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Magnesium binding site 4 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg804

b:14.6
occ:1.00
MG A:CLA804 0.0 14.6 1.0
NB A:CLA804 2.0 14.6 1.0
ND A:CLA804 2.0 14.6 1.0
NC A:CLA804 2.1 14.6 1.0
NA A:CLA804 2.1 14.6 1.0
NE2 A:HIS77 2.2 13.6 1.0
CD2 A:HIS77 2.9 13.6 1.0
C4D A:CLA804 2.9 14.6 1.0
C1B A:CLA804 3.0 14.6 1.0
C4A A:CLA804 3.0 14.6 1.0
C4B A:CLA804 3.1 14.6 1.0
C1C A:CLA804 3.1 14.6 1.0
C4C A:CLA804 3.1 14.6 1.0
C1D A:CLA804 3.1 14.6 1.0
C1A A:CLA804 3.2 14.6 1.0
CE1 A:HIS77 3.3 13.6 1.0
CHB A:CLA804 3.4 14.6 1.0
CHC A:CLA804 3.4 14.6 1.0
CHA A:CLA804 3.5 14.6 1.0
CHD A:CLA804 3.5 14.6 1.0
CMB A:CLA829 3.6 14.4 1.0
CG A:HIS77 4.1 13.6 1.0
C3D A:CLA804 4.2 14.6 1.0
ND1 A:HIS77 4.2 13.6 1.0
C2B A:CLA804 4.3 14.6 1.0
C3B A:CLA804 4.3 14.6 1.0
C2C A:CLA804 4.3 14.6 1.0
C2D A:CLA804 4.3 14.6 1.0
C3C A:CLA804 4.4 14.6 1.0
C3A A:CLA804 4.4 14.6 1.0
C2A A:CLA804 4.5 14.6 1.0
CG2 A:ILE73 4.5 13.0 1.0
CBB A:CLA829 4.9 14.4 1.0
CBD A:CLA804 4.9 14.6 1.0
C2B A:CLA829 5.0 14.4 1.0

Magnesium binding site 5 out of 232 in 8wmw

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Magnesium binding site 5 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:30.1
occ:1.00
MG A:CLA805 0.0 30.1 1.0
ND A:CLA805 2.0 30.1 1.0
NB A:CLA805 2.0 30.1 1.0
NC A:CLA805 2.1 30.1 1.0
NA A:CLA805 2.1 30.1 1.0
OE1 A:GLN80 2.2 16.9 1.0
C4D A:CLA805 2.9 30.1 1.0
C1B A:CLA805 3.0 30.1 1.0
C4B A:CLA805 3.0 30.1 1.0
C1C A:CLA805 3.1 30.1 1.0
C4A A:CLA805 3.1 30.1 1.0
C1A A:CLA805 3.1 30.1 1.0
C4C A:CLA805 3.1 30.1 1.0
C1D A:CLA805 3.1 30.1 1.0
CD A:GLN80 3.2 16.9 1.0
CHC A:CLA805 3.4 30.1 1.0
CHB A:CLA805 3.4 30.1 1.0
CHA A:CLA805 3.4 30.1 1.0
CHD A:CLA805 3.5 30.1 1.0
NE2 A:GLN80 3.7 16.9 1.0
C16 A:CLA805 3.8 30.1 1.0
C17 A:CLA805 3.9 30.1 1.0
C3D A:CLA805 4.2 30.1 1.0
C2B A:CLA805 4.3 30.1 1.0
C3B A:CLA805 4.3 30.1 1.0
C2C A:CLA805 4.3 30.1 1.0
C2D A:CLA805 4.3 30.1 1.0
CMA A:CLA804 4.3 14.6 1.0
C3C A:CLA805 4.4 30.1 1.0
C3A A:CLA805 4.4 30.1 1.0
C2A A:CLA805 4.4 30.1 1.0
CG A:GLN80 4.5 16.9 1.0
C19 A:CLA805 4.7 30.1 1.0
C18 A:CLA805 4.8 30.1 1.0
CBD A:CLA805 4.9 30.1 1.0

Magnesium binding site 6 out of 232 in 8wmw

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Magnesium binding site 6 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg806

b:25.4
occ:1.00
MG A:CLA806 0.0 25.4 1.0
NB A:CLA806 2.0 25.4 1.0
ND A:CLA806 2.0 25.4 1.0
NC A:CLA806 2.1 25.4 1.0
NA A:CLA806 2.1 25.4 1.0
NE2 A:HIS94 2.2 17.2 1.0
C4D A:CLA806 2.9 25.4 1.0
CE1 A:HIS94 3.0 17.2 1.0
C1B A:CLA806 3.0 25.4 1.0
C4A A:CLA806 3.0 25.4 1.0
C4B A:CLA806 3.1 25.4 1.0
C1C A:CLA806 3.1 25.4 1.0
C4C A:CLA806 3.1 25.4 1.0
C1A A:CLA806 3.1 25.4 1.0
C1D A:CLA806 3.1 25.4 1.0
CD2 A:HIS94 3.4 17.2 1.0
CHB A:CLA806 3.4 25.4 1.0
CHC A:CLA806 3.4 25.4 1.0
CHA A:CLA806 3.4 25.4 1.0
CHD A:CLA806 3.5 25.4 1.0
ND1 A:HIS94 4.2 17.2 1.0
C3D A:CLA806 4.2 25.4 1.0
C2B A:CLA806 4.3 25.4 1.0
C3B A:CLA806 4.3 25.4 1.0
C2C A:CLA806 4.3 25.4 1.0
C2D A:CLA806 4.3 25.4 1.0
C3C A:CLA806 4.4 25.4 1.0
C3A A:CLA806 4.4 25.4 1.0
CG A:HIS94 4.4 17.2 1.0
C2A A:CLA806 4.4 25.4 1.0
CBD A:CLA806 4.9 25.4 1.0

Magnesium binding site 7 out of 232 in 8wmw

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Magnesium binding site 7 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg807

b:14.5
occ:1.00
MG A:CLA807 0.0 14.5 1.0
NB A:CLA807 2.0 14.5 1.0
ND A:CLA807 2.0 14.5 1.0
NC A:CLA807 2.1 14.5 1.0
NA A:CLA807 2.1 14.5 1.0
OE1 A:GLN116 2.2 18.2 1.0
C4D A:CLA807 2.9 14.5 1.0
C1B A:CLA807 3.0 14.5 1.0
C4A A:CLA807 3.0 14.5 1.0
C4B A:CLA807 3.1 14.5 1.0
CD A:GLN116 3.1 18.2 1.0
C1C A:CLA807 3.1 14.5 1.0
C4C A:CLA807 3.1 14.5 1.0
C1D A:CLA807 3.2 14.5 1.0
C1A A:CLA807 3.2 14.5 1.0
CHB A:CLA807 3.4 14.5 1.0
CHC A:CLA807 3.4 14.5 1.0
NE2 A:GLN116 3.5 18.2 1.0
CHA A:CLA807 3.5 14.5 1.0
CHD A:CLA807 3.5 14.5 1.0
C5 A:CLA827 4.0 16.0 1.0
C3D A:CLA807 4.2 14.5 1.0
C2B A:CLA807 4.3 14.5 1.0
C3 A:CLA827 4.3 16.0 1.0
C3B A:CLA807 4.3 14.5 1.0
C2C A:CLA807 4.3 14.5 1.0
CG A:GLN116 4.3 18.2 1.0
C2D A:CLA807 4.3 14.5 1.0
C3C A:CLA807 4.3 14.5 1.0
C3A A:CLA807 4.4 14.5 1.0
C2A A:CLA807 4.5 14.5 1.0
C4 A:CLA827 4.5 16.0 1.0
C2 A:CLA827 4.9 16.0 1.0
CBD A:CLA807 4.9 14.5 1.0
CB A:GLN116 5.0 18.2 1.0
CMA A:CLA807 5.0 14.5 1.0

Magnesium binding site 8 out of 232 in 8wmw

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Magnesium binding site 8 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg808

b:23.4
occ:1.00
MG A:CLA808 0.0 23.4 1.0
NB A:CLA808 2.0 23.4 1.0
ND A:CLA808 2.0 23.4 1.0
NC A:CLA808 2.1 23.4 1.0
NA A:CLA808 2.1 23.4 1.0
OE1 A:GLN124 2.2 22.9 1.0
C4D A:CLA808 2.9 23.4 1.0
C1B A:CLA808 3.0 23.4 1.0
C4B A:CLA808 3.0 23.4 1.0
C4A A:CLA808 3.0 23.4 1.0
C1C A:CLA808 3.1 23.4 1.0
C1D A:CLA808 3.1 23.4 1.0
C4C A:CLA808 3.1 23.4 1.0
C1A A:CLA808 3.2 23.4 1.0
CD A:GLN124 3.4 22.9 1.0
CHC A:CLA808 3.4 23.4 1.0
CHB A:CLA808 3.4 23.4 1.0
CHA A:CLA808 3.4 23.4 1.0
CHD A:CLA808 3.5 23.4 1.0
C17 B:LHG802 3.9 20.7 1.0
NE2 A:GLN124 4.0 22.9 1.0
C3D A:CLA808 4.2 23.4 1.0
C2B A:CLA808 4.2 23.4 1.0
C3B A:CLA808 4.2 23.4 1.0
C2D A:CLA808 4.3 23.4 1.0
C2C A:CLA808 4.3 23.4 1.0
C3C A:CLA808 4.4 23.4 1.0
C3A A:CLA808 4.4 23.4 1.0
C2A A:CLA808 4.5 23.4 1.0
CG A:GLN124 4.5 22.9 1.0
CB A:GLN124 4.6 22.9 1.0
C18 B:LHG802 4.6 20.7 1.0
CBD A:CLA808 4.9 23.4 1.0

Magnesium binding site 9 out of 232 in 8wmw

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Magnesium binding site 9 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg809

b:17.3
occ:1.00
MG A:CLA809 0.0 17.3 1.0
NB A:CLA809 2.0 17.3 1.0
ND A:CLA809 2.0 17.3 1.0
NC A:CLA809 2.1 17.3 1.0
NA A:CLA809 2.1 17.3 1.0
NE2 A:HIS180 2.3 15.2 1.0
C4D A:CLA809 2.9 17.3 1.0
C1B A:CLA809 3.0 17.3 1.0
C4B A:CLA809 3.1 17.3 1.0
C4A A:CLA809 3.1 17.3 1.0
C1C A:CLA809 3.1 17.3 1.0
CE1 A:HIS180 3.1 15.2 1.0
C1A A:CLA809 3.1 17.3 1.0
C4C A:CLA809 3.1 17.3 1.0
C1D A:CLA809 3.2 17.3 1.0
CD2 A:HIS180 3.3 15.2 1.0
CHC A:CLA809 3.4 17.3 1.0
CHB A:CLA809 3.4 17.3 1.0
CHA A:CLA809 3.4 17.3 1.0
CHD A:CLA809 3.6 17.3 1.0
C3D A:CLA809 4.2 17.3 1.0
C2B A:CLA809 4.3 17.3 1.0
ND1 A:HIS180 4.3 15.2 1.0
C3B A:CLA809 4.3 17.3 1.0
C2C A:CLA809 4.3 17.3 1.0
C3C A:CLA809 4.4 17.3 1.0
C2D A:CLA809 4.4 17.3 1.0
C3A A:CLA809 4.4 17.3 1.0
CG A:HIS180 4.4 15.2 1.0
C2A A:CLA809 4.5 17.3 1.0
CBD A:CLA809 4.9 17.3 1.0

Magnesium binding site 10 out of 232 in 8wmw

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Magnesium binding site 10 out of 232 in the The Structure of Psi-11CAC at the Stationary Growth Phase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of The Structure of Psi-11CAC at the Stationary Growth Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg810

b:18.7
occ:1.00
MG A:CLA810 0.0 18.7 1.0
ND A:CLA810 2.0 18.7 1.0
NB A:CLA810 2.0 18.7 1.0
NC A:CLA810 2.1 18.7 1.0
NA A:CLA810 2.1 18.7 1.0
NE2 A:HIS182 2.2 17.5 1.0
C4D A:CLA810 2.9 18.7 1.0
O1A A:CLA803 3.0 17.9 1.0
C1B A:CLA810 3.0 18.7 1.0
C4A A:CLA810 3.1 18.7 1.0
CE1 A:HIS182 3.1 17.5 1.0
C4B A:CLA810 3.1 18.7 1.0
C1C A:CLA810 3.1 18.7 1.0
C4C A:CLA810 3.1 18.7 1.0
C1D A:CLA810 3.1 18.7 1.0
C1A A:CLA810 3.2 18.7 1.0
CD2 A:HIS182 3.2 17.5 1.0
CHB A:CLA810 3.4 18.7 1.0
CHC A:CLA810 3.5 18.7 1.0
CHA A:CLA810 3.5 18.7 1.0
CHD A:CLA810 3.5 18.7 1.0
CGA A:CLA803 4.0 17.9 1.0
ND1 A:HIS182 4.2 17.5 1.0
C3D A:CLA810 4.2 18.7 1.0
CG A:HIS182 4.3 17.5 1.0
C2B A:CLA810 4.3 18.7 1.0
C3B A:CLA810 4.3 18.7 1.0
C2D A:CLA810 4.3 18.7 1.0
C2C A:CLA810 4.4 18.7 1.0
C3C A:CLA810 4.4 18.7 1.0
C3A A:CLA810 4.4 18.7 1.0
C2A A:CLA810 4.5 18.7 1.0
CD2 A:TYR181 4.6 16.3 1.0
CBA A:CLA803 4.9 17.9 1.0
CBD A:CLA810 4.9 18.7 1.0
O2A A:CLA803 4.9 17.9 1.0

Reference:

S.Zhang, L.Si, X.Su, X.Zhao, X.An, M.Li. Growth Phase-Dependent Reorganization of Cryptophyte Photosystem I Antennae. Commun Biol V. 7 560 2024.
ISSN: ESSN 2399-3642
PubMed: 38734819
DOI: 10.1038/S42003-024-06268-5
Page generated: Fri Oct 4 23:18:13 2024

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