Magnesium in PDB 8wpf: Structure of Monkeypox Virus Polymerase Complex F8-A22-E4-H5 with Exogenous Dna Bearing One Abasic Site

The binding sites of Magnesium atom in the Structure of Monkeypox Virus Polymerase Complex F8-A22-E4-H5 with Exogenous Dna Bearing One Abasic Site (pdb code 8wpf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Monkeypox Virus Polymerase Complex F8-A22-E4-H5 with Exogenous Dna Bearing One Abasic Site, PDB code: 8wpf:

Magnesium binding site 1 out of 1 in the Structure of Monkeypox Virus Polymerase Complex F8-A22-E4-H5 with Exogenous Dna Bearing One Abasic Site


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Monkeypox Virus Polymerase Complex F8-A22-E4-H5 with Exogenous Dna Bearing One Abasic Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2002 b:1.8 occ:1.00 O1G A:D3T2001 2.0 4.9 1.0 OD2 A:ASP753 2.0 2.4 1.0 O2B A:D3T2001 2.1 4.9 1.0 O A:TYR550 2.2 2.3 1.0 OD1 A:ASP549 2.6 4.2 1.0 PB A:D3T2001 2.7 4.9 1.0 O3A A:D3T2001 2.9 4.9 1.0 PG A:D3T2001 3.0 4.9 1.0 O3B A:D3T2001 3.1 4.9 1.0 CG A:ASP753 3.2 2.4 1.0 O2A A:D3T2001 3.3 4.9 1.0 C A:TYR550 3.3 2.3 1.0 PA A:D3T2001 3.5 4.9 1.0 CG A:ASP549 3.5 4.2 1.0 OD1 A:ASP753 3.6 2.4 1.0 O3G A:D3T2001 3.7 4.9 1.0 N A:SER552 3.9 9.7 1.0 N A:TYR550 3.9 2.3 1.0 O5' A:D3T2001 3.9 4.9 1.0 OD2 A:ASP549 4.0 4.2 1.0 CA A:TYR550 4.0 2.3 1.0 C5' A:D3T2001 4.1 4.9 1.0 O1B A:D3T2001 4.2 4.9 1.0 O2G A:D3T2001 4.2 4.9 1.0 N A:LEU553 4.3 4.9 1.0 CB A:TYR550 4.3 2.3 1.0 CB A:ASP753 4.3 2.4 1.0 C A:ASP549 4.3 4.2 1.0 N A:ASN551 4.4 3.8 1.0 CA A:SER552 4.5 9.7 1.0 C A:ASN551 4.7 3.8 1.0 CA A:ASN551 4.7 3.8 1.0 CB A:ASP549 4.7 4.2 1.0 CB A:LEU553 4.8 4.9 1.0 CA A:ASP549 4.8 4.2 1.0 O A:ASP549 4.9 4.2 1.0 O1A A:D3T2001 5.0 4.9 1.0 C A:SER552 5.0 9.7 1.0

X.Wang, L.Ma, N.Li, N.Gao. Structural Insights Into the Assembly and Mechanism of Monkeypox Virus Dna Polymerase Complex F8-A22-E4-H5 Mol.Cell V. 83 2023.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2023.10.038