Magnesium in PDB 8wpv: Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN

The structure of Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN, PDB code: 8wpv was solved by W.M.Wang, H.F.Xi, W.J.Gong, D.Y.Ma, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.93 / 2.06
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	180.599, 180.599, 180.599, 90, 90, 90
R / Rfree (%)	21.7 / 24.9

The structure of Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN also contains other interesting chemical elements:

Iron	(Fe)	10 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Magnesium atom in the Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN (pdb code 8wpv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN, PDB code: 8wpv:

Magnesium binding site 1 out of 1 in the Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Truncated Mutant (1-171) of Ferritin From Ureaplasma Diversum Soaked in FE2+ Solution For 30MIN within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg211 b:68.0 occ:1.00 O A:HOH327 2.0 60.0 1.0 O A:HOH396 2.2 66.2 1.0 O A:HOH401 2.2 59.4 1.0 O A:HOH302 2.2 52.6 1.0 O A:HOH313 2.3 48.7 1.0 O A:HOH390 3.9 48.6 1.0 OD1 A:ASP124 4.0 46.6 1.0 O A:HOH309 4.2 47.2 1.0 O A:LEU121 4.3 50.1 1.0 OD2 A:ASP124 4.5 57.8 1.0 CG A:ASP124 4.6 48.2 1.0

W.Wang, H.Xi, D.Fu, D.Ma, W.Gong, Y.Zhao, X.Li, L.Wu, Y.Guo, G.Zhao, H.Wang. Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized By Protein Nanocages. J.Am.Chem.Soc. V. 146 11657 2024.
ISSN: ESSN 1520-5126
PubMed: 38641862
DOI: 10.1021/JACS.3C13830