Magnesium in PDB 8wuc: Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex

All present enzymatic activity of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex:
5.6.1.7;

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex (pdb code 8wuc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex, PDB code: 8wuc:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:70.3 occ:1.00 O2A A:ADP601 2.1 84.3 1.0 OD1 A:ASP87 2.5 90.4 1.0 O2B A:ADP601 2.6 82.8 1.0 O3B A:ADP601 2.9 78.0 1.0 OD2 A:ASP87 3.0 92.4 1.0 CG A:ASP87 3.1 87.7 1.0 PB A:ADP601 3.2 75.4 1.0 PA A:ADP601 3.4 76.8 1.0 O3A A:ADP601 3.7 76.6 1.0 C5' A:ADP601 4.1 75.9 1.0 O A:SER151 4.2 81.0 1.0 O5' A:ADP601 4.3 74.7 1.0 CA A:SER151 4.5 70.8 1.0 O1A A:ADP601 4.5 73.7 1.0 CB A:ASP87 4.6 76.2 1.0 N A:GLY88 4.6 71.4 1.0 O1B A:ADP601 4.6 73.2 1.0 CB A:SER151 4.7 73.2 1.0 OG A:SER151 4.7 82.0 1.0 OD2 A:ASP398 4.8 105.9 1.0 C A:SER151 4.8 77.0 1.0

Magnesium binding site 2 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:73.3 occ:1.00 O2A B:ADP601 2.1 85.8 1.0 OD1 B:ASP87 2.4 94.8 1.0 O2B B:ADP601 2.6 85.5 1.0 O3B B:ADP601 2.9 80.7 1.0 OD2 B:ASP87 3.1 98.3 1.0 CG B:ASP87 3.1 93.4 1.0 PB B:ADP601 3.2 77.8 1.0 PA B:ADP601 3.4 79.0 1.0 O3A B:ADP601 3.7 77.9 1.0 C5' B:ADP601 4.2 77.5 1.0 O B:SER151 4.3 84.4 1.0 O5' B:ADP601 4.4 75.3 1.0 OD2 B:ASP398 4.4 110.2 1.0 O1A B:ADP601 4.5 75.2 1.0 N B:GLY88 4.5 74.3 1.0 CA B:SER151 4.5 70.4 1.0 CB B:ASP87 4.6 80.1 1.0 O1B B:ADP601 4.6 77.3 1.0 CB B:SER151 4.7 74.0 1.0 OG B:SER151 4.7 84.6 1.0 C B:SER151 4.9 78.1 1.0 CG B:ASP398 5.0 106.0 1.0

Magnesium binding site 3 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:73.4 occ:1.00 O2A C:ADP601 2.1 84.3 1.0 OD1 C:ASP87 2.5 92.7 1.0 O2B C:ADP601 2.5 85.7 1.0 O3B C:ADP601 3.0 82.3 1.0 OD2 C:ASP87 3.1 95.3 1.0 CG C:ASP87 3.1 91.1 1.0 PB C:ADP601 3.2 78.5 1.0 PA C:ADP601 3.4 79.1 1.0 O3A C:ADP601 3.7 77.5 1.0 C5' C:ADP601 4.1 76.6 1.0 O C:SER151 4.2 83.1 1.0 O5' C:ADP601 4.4 74.8 1.0 CA C:SER151 4.5 69.1 1.0 O1A C:ADP601 4.5 75.7 1.0 N C:GLY88 4.6 75.4 1.0 O1B C:ADP601 4.6 76.3 1.0 CB C:ASP87 4.6 79.7 1.0 CB C:SER151 4.7 71.9 1.0 OD2 C:ASP398 4.8 108.5 1.0 C C:SER151 4.8 76.7 1.0 OG C:SER151 4.9 81.4 1.0

Magnesium binding site 4 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:65.4 occ:1.00 O2A D:ADP601 2.1 79.4 1.0 O2B D:ADP601 2.5 79.3 1.0 OD1 D:ASP87 2.5 83.5 1.0 O3B D:ADP601 3.1 75.5 1.0 OD2 D:ASP87 3.2 87.4 1.0 PB D:ADP601 3.2 74.6 1.0 CG D:ASP87 3.2 82.7 1.0 PA D:ADP601 3.4 74.2 1.0 O3A D:ADP601 3.8 73.7 1.0 C5' D:ADP601 4.2 72.1 1.0 O D:SER151 4.2 77.0 1.0 O5' D:ADP601 4.4 71.4 1.0 CA D:SER151 4.4 65.2 1.0 O1A D:ADP601 4.5 70.2 1.0 O1B D:ADP601 4.6 68.8 1.0 CB D:SER151 4.7 70.1 1.0 CB D:ASP87 4.7 70.9 1.0 N D:GLY88 4.7 66.5 1.0 OG D:SER151 4.7 79.3 1.0 C D:SER151 4.8 70.8 1.0 OD2 D:ASP398 4.8 99.0 1.0

Magnesium binding site 5 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg602 b:72.2 occ:1.00 O2A E:ADP601 2.0 86.7 1.0 OD1 E:ASP87 2.4 92.9 1.0 O2B E:ADP601 2.7 84.4 1.0 O3B E:ADP601 3.0 82.2 1.0 OD2 E:ASP87 3.1 97.5 1.0 CG E:ASP87 3.2 91.8 1.0 PB E:ADP601 3.3 79.4 1.0 PA E:ADP601 3.4 78.6 1.0 O3A E:ADP601 3.8 79.8 1.0 C5' E:ADP601 4.2 76.4 1.0 O E:SER151 4.2 83.1 1.0 O5' E:ADP601 4.4 73.5 1.0 OD2 E:ASP398 4.4 108.9 1.0 O1A E:ADP601 4.4 73.4 1.0 CA E:SER151 4.5 70.7 1.0 CB E:ASP87 4.6 78.8 1.0 N E:GLY88 4.6 73.2 1.0 CB E:SER151 4.7 74.2 1.0 OG E:SER151 4.8 86.0 1.0 O1B E:ADP601 4.8 75.6 1.0 C E:SER151 4.8 77.0 1.0

Magnesium binding site 6 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg602 b:76.3 occ:1.00 O3B F:ADP601 1.9 83.7 1.0 O2A F:ADP601 2.2 86.8 1.0 OD1 F:ASP87 2.6 91.7 1.0 OD2 F:ASP87 3.2 97.4 1.0 CG F:ASP87 3.2 91.5 1.0 PB F:ADP601 3.3 76.0 1.0 PA F:ADP601 3.5 80.7 1.0 O3A F:ADP601 3.7 86.7 1.0 O F:SER151 4.1 85.5 1.0 C5' F:ADP601 4.2 75.1 1.0 O1B F:ADP601 4.2 69.6 1.0 OD2 F:ASP398 4.2 106.7 1.0 O5' F:ADP601 4.2 73.7 1.0 O2B F:ADP601 4.3 78.0 1.0 CA F:SER151 4.4 72.8 1.0 CB F:SER151 4.6 75.0 1.0 N F:GLY88 4.6 75.5 1.0 O1A F:ADP601 4.7 77.4 1.0 CB F:ASP87 4.7 80.6 1.0 C F:SER151 4.7 79.8 1.0 OG F:SER151 4.7 85.2 1.0 CG F:ASP398 5.0 104.3 1.0

Magnesium binding site 7 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg602 b:72.1 occ:1.00 O2A G:ADP601 2.0 86.3 1.0 OD1 G:ASP87 2.5 91.5 1.0 O2B G:ADP601 2.8 83.7 1.0 O3B G:ADP601 2.9 79.7 1.0 OD2 G:ASP87 3.1 94.4 1.0 CG G:ASP87 3.2 89.6 1.0 PB G:ADP601 3.3 75.8 1.0 PA G:ADP601 3.4 79.1 1.0 O3A G:ADP601 3.8 77.2 1.0 C5' G:ADP601 4.1 77.5 1.0 O G:SER151 4.2 83.2 1.0 O5' G:ADP601 4.4 76.3 1.0 OD2 G:ASP398 4.4 106.7 1.0 CA G:SER151 4.5 70.2 1.0 O1A G:ADP601 4.5 75.6 1.0 CB G:ASP87 4.6 77.7 1.0 N G:GLY88 4.6 71.8 1.0 CB G:SER151 4.7 74.2 1.0 O1B G:ADP601 4.8 74.3 1.0 OG G:SER151 4.8 85.2 1.0 C G:SER151 4.8 76.9 1.0 CG G:ASP398 5.0 104.1 1.0

Magnesium binding site 8 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg602 b:73.5 occ:1.00 O1A H:ADP601 2.1 86.3 1.0 OD1 H:ASP87 2.5 95.7 1.0 O1B H:ADP601 2.6 83.8 1.0 OD2 H:ASP87 3.0 98.9 1.0 O3B H:ADP601 3.0 81.3 1.0 CG H:ASP87 3.1 94.0 1.0 PB H:ADP601 3.2 76.7 1.0 PA H:ADP601 3.4 81.8 1.0 O3A H:ADP601 3.8 79.4 1.0 C5' H:ADP601 4.1 78.2 1.0 O H:SER151 4.2 85.3 1.0 O5' H:ADP601 4.3 77.2 1.0 CA H:SER151 4.4 72.7 1.0 O2A H:ADP601 4.5 76.7 1.0 CB H:ASP87 4.6 81.3 1.0 N H:GLY88 4.6 75.2 1.0 O2B H:ADP601 4.7 75.7 1.0 CB H:SER151 4.7 75.8 1.0 OG H:SER151 4.7 86.7 1.0 OD2 H:ASP398 4.8 108.6 1.0 C H:SER151 4.8 79.4 1.0

Magnesium binding site 9 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg602 b:57.9 occ:1.00 O1A I:ADP601 2.1 75.5 1.0 O1B I:ADP601 2.2 75.3 1.0 OD1 I:ASP87 2.5 82.7 1.0 PB I:ADP601 3.1 68.2 1.0 OD2 I:ASP87 3.2 83.1 1.0 CG I:ASP87 3.2 79.9 1.0 O3B I:ADP601 3.2 65.7 1.0 PA I:ADP601 3.4 68.0 1.0 O3A I:ADP601 3.7 68.1 1.0 C5' I:ADP601 4.2 66.9 1.0 O I:SER151 4.2 67.3 1.0 O5' I:ADP601 4.4 63.8 1.0 O2A I:ADP601 4.4 62.3 1.0 O2B I:ADP601 4.5 61.7 1.0 CA I:SER151 4.5 56.5 1.0 CB I:ASP87 4.6 67.4 1.0 N I:GLY88 4.7 59.2 1.0 OD2 I:ASP398 4.7 92.5 1.0 CB I:SER151 4.7 60.0 1.0 OG I:SER151 4.7 68.6 1.0 C I:SER151 4.9 63.3 1.0

Magnesium binding site 10 out of 14 in the Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of H. Thermoluteolus Groel-GROES2 Football Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg602 b:63.9 occ:1.00 O1A J:ADP601 2.1 79.2 1.0 OD1 J:ASP87 2.5 84.3 1.0 O1B J:ADP601 2.5 79.8 1.0 O3B J:ADP601 3.1 73.9 1.0 OD2 J:ASP87 3.1 86.5 1.0 CG J:ASP87 3.2 82.7 1.0 PB J:ADP601 3.2 74.9 1.0 PA J:ADP601 3.4 74.5 1.0 O3A J:ADP601 3.8 74.3 1.0 C5' J:ADP601 4.1 71.5 1.0 O J:SER151 4.2 76.2 1.0 O5' J:ADP601 4.4 71.8 1.0 CA J:SER151 4.4 64.0 1.0 O2A J:ADP601 4.5 69.0 1.0 O2B J:ADP601 4.6 69.5 1.0 CB J:ASP87 4.6 70.0 1.0 CB J:SER151 4.7 68.0 1.0 N J:GLY88 4.7 65.8 1.0 OG J:SER151 4.8 77.2 1.0 C J:SER151 4.8 70.5 1.0 OD2 J:ASP398 4.8 98.2 1.0

Z.Liao, C.C.Gopalasingam, M.Kameya, C.Gerle, H.Shigematsu, M.Ishii, T.Arakawa, S.Fushinobu. Structural Insights Into Thermophilic Chaperonin Complexes. Structure 2024.
ISSN: ISSN 0969-2126
PubMed: 38492570
DOI: 10.1016/J.STR.2024.02.012