Magnesium in PDB 8x5n: Tetramer Gabija with Atp

The binding sites of Magnesium atom in the Tetramer Gabija with Atp (pdb code 8x5n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Tetramer Gabija with Atp, PDB code: 8x5n:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Tetramer Gabija with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tetramer Gabija with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:15.1 occ:1.00 O2B A:ATP601 2.1 29.7 1.0 O1G A:ATP601 2.8 41.1 1.0 CG2 A:THR36 3.2 22.0 1.0 CB A:THR36 3.3 22.6 1.0 PB A:ATP601 3.4 34.8 1.0 O3B A:ATP601 3.5 40.4 1.0 OE2 A:GLU288 3.7 30.4 1.0 O1A A:ATP601 3.7 42.5 1.0 PG A:ATP601 3.7 50.5 1.0 O3A A:ATP601 4.1 46.9 1.0 OG1 A:THR36 4.2 29.6 1.0 N A:THR36 4.3 17.9 1.0 PA A:ATP601 4.4 54.1 1.0 CA A:THR36 4.4 16.6 1.0 O2G A:ATP601 4.4 41.7 1.0 CB D:ASP259 4.5 48.5 1.0 O1B A:ATP601 4.5 38.5 1.0 CD A:GLU288 4.6 34.9 1.0 OE2 A:GLU289 4.7 34.6 1.0 OE1 A:GLU289 4.9 37.0 1.0 O2A A:ATP601 4.9 27.8 1.0 O3G A:ATP601 5.0 39.9 1.0

Magnesium binding site 2 out of 4 in the Tetramer Gabija with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tetramer Gabija with Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:42.5 occ:1.00 O1G B:ATP601 2.6 44.9 1.0 O2B B:ATP601 3.5 38.3 1.0 OE2 B:GLU288 3.5 34.6 1.0 CG2 B:THR36 3.8 24.5 1.0 CB B:THR36 3.8 26.7 1.0 PG B:ATP601 3.9 59.6 1.0 CB C:ASP259 4.2 62.9 1.0 O3B B:ATP601 4.2 44.9 1.0 CD B:GLU288 4.3 38.0 1.0 OG1 B:THR36 4.3 33.1 1.0 OE1 B:GLU289 4.3 37.7 1.0 O1A B:ATP601 4.3 52.2 1.0 OE2 B:GLU289 4.4 44.2 1.0 PB B:ATP601 4.5 35.7 1.0 O2G B:ATP601 4.6 49.8 1.0 CD B:GLU289 4.7 40.0 1.0 CG B:GLU288 4.9 33.6 1.0 OD2 C:ASP259 4.9 66.9 1.0

Magnesium binding site 3 out of 4 in the Tetramer Gabija with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tetramer Gabija with Atp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:22.7 occ:1.00 O2B C:ATP601 2.1 31.3 1.0 O1G C:ATP601 2.5 40.8 1.0 OE2 C:GLU288 3.1 34.2 1.0 PB C:ATP601 3.3 23.3 1.0 O3B C:ATP601 3.4 43.4 1.0 PG C:ATP601 3.4 55.4 1.0 CB C:THR36 3.4 23.4 1.0 CG2 C:THR36 3.6 19.5 1.0 N C:THR36 3.9 22.1 1.0 O2G C:ATP601 4.1 41.0 1.0 CD C:GLU288 4.1 32.5 1.0 CA C:THR36 4.3 18.1 1.0 O1B C:ATP601 4.3 36.8 1.0 O1A C:ATP601 4.3 51.8 1.0 O3A C:ATP601 4.4 36.2 1.0 CB C:LYS35 4.4 18.1 1.0 OE2 C:GLU289 4.4 39.6 1.0 OG1 C:THR36 4.5 36.0 1.0 CE C:LYS35 4.5 14.4 1.0 C C:LYS35 4.7 16.1 1.0 OE1 C:GLU288 4.7 31.1 1.0 O3G C:ATP601 4.7 45.3 1.0 PA C:ATP601 4.8 45.6 1.0 CD C:GLU289 4.9 38.3 1.0 CA C:LYS35 5.0 17.7 1.0

Magnesium binding site 4 out of 4 in the Tetramer Gabija with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tetramer Gabija with Atp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:24.0 occ:1.00 O2B D:ATP601 2.1 36.3 1.0 O1G D:ATP601 2.6 48.5 1.0 CB D:THR36 3.2 26.9 1.0 OE2 D:GLU288 3.3 33.4 1.0 PB D:ATP601 3.4 36.4 1.0 PG D:ATP601 3.4 56.8 1.0 CG2 D:THR36 3.5 28.0 1.0 O3B D:ATP601 3.5 43.7 1.0 N D:THR36 3.7 24.1 1.0 O2G D:ATP601 3.8 45.4 1.0 CA D:THR36 4.0 24.9 1.0 OG1 D:THR36 4.2 35.0 1.0 OE2 D:GLU289 4.3 36.3 1.0 O1A D:ATP601 4.3 50.8 1.0 O3A D:ATP601 4.4 47.9 1.0 CD D:GLU288 4.4 35.2 1.0 O1B D:ATP601 4.4 41.4 1.0 CB D:LYS35 4.4 20.0 1.0 C D:LYS35 4.6 15.7 1.0 OE1 D:GLU289 4.7 40.3 1.0 CD D:GLU289 4.7 36.4 1.0 PA D:ATP601 4.8 56.5 1.0 CE D:LYS35 4.8 22.9 1.0 O3G D:ATP601 4.8 44.6 1.0 CA D:LYS35 4.9 18.1 1.0 N D:LYS35 4.9 21.5 1.0

J.Li, C.Rui, Z.Wang, Y.Wuliu, Z.Bing, L.Wang. Structures and Activation Mechanism of Gabija Anti-Phage System To Be Published.